AT2G35860.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : FASCICLIN-like arabinogalactan protein 16 precursor | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
FASCICLIN-like arabinogalactan protein 16 precursor (FLA16); INVOLVED IN: cell adhesion; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 15 precursor (TAIR:AT3G52370.1); Has 1005 Blast hits to 970 proteins in 256 species: Archae - 17; Bacteria - 426; Metazoa - 148; Fungi - 43; Plants - 238; Viruses - 1; Other Eukaryotes - 132 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:15059859..15061810 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 49103.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.84 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 445 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDSSYGATKF LLLLFLTTSI ATALPDNKPV PGQINSNSVL VALLDSHYTE LAELVEKALL LQTLEEAVGK HNITIFAPRN DALERNLDPL FKSFLLEPRN 101: LKSLQSLLMF HILPKRITSP QWPSLSHHHR TLSNDHLHLT VDVNTLKVDS AEIIRPDDVI RPDGIIHGIE RLLIPRSVQE DFNRRRSLRS ISAVIPEGAP 201: EVDPRTHRLK KPSPAVPAGA PPVLPIYDAM SPGPSLAPAP APGPGGPRGH FNGDAQVKDF IHTLLHYGGY NEMADILVNL TSLATEMGRL VSEGYVLTVL 301: APNDEAMAKL TTDQLSEPGA PEQIMYYHII PEYQTEESMY NAVRRFGKVK YDSLRFPHKV LAQEADGSVK FGHGDGSAYL FDPDIYTDGR ISVQGIDGVL 401: FPKEETPATE IKPAAPVVKK VSKSRRGKLM EVACRMMGSR FIPCQ |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)