AT3G52370.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : FASCICLIN-like arabinogalactan protein 15 precursor | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
FASCICLIN-like arabinogalactan protein 15 precursor (FLA15); INVOLVED IN: cell adhesion; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 16 precursor (TAIR:AT2G35860.1); Has 1194 Blast hits to 1139 proteins in 270 species: Archae - 8; Bacteria - 524; Metazoa - 184; Fungi - 15; Plants - 237; Viruses - 3; Other Eukaryotes - 223 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:19417549..19419549 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 48075.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.68 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 436 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDDLSKLLFF LLLTISITTA LPDKPGSGQI NSNSVLVALL DSHYTELAEL VEKALLLQTL EEAVGQHNIT IFAPRNDALE KNLDPEFKSF LLQPKNLKSL 101: QSLLMFHILP KRITSPQFSS AVVSHRTLSN DHLHFTNGKV NSAEITKPDD LTRPDGIIHG IERLLIPRSV QEDFNRRRSL RSIAAVLPEG APEVDPRTHR 201: LKKKPAPIPA GAPPVLPVYD AMSPGPSLAP APAPGPGGPR HHFNGEAQVK DFIHTLLHYG GYNEMADILV NLTSLATEMG RLVSEGYVLT VLAPNDEAMA 301: KLTTDQLSEP GAPEQIMYYH IIPEYQTEES MYNSVRRFGK IRYDSLRFPH KVEAQEADGS VKFGHGDGSA YLFDPDIYTD GRISVQGIDG VLFPEEKTPV 401: EKKTGVPVVK KAPKPRRGKL MEVACTMLGS QFPTCQ |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)