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AT3G52370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FASCICLIN-like arabinogalactan protein 15 precursor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FASCICLIN-like arabinogalactan protein 15 precursor (FLA15); INVOLVED IN: cell adhesion; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 16 precursor (TAIR:AT2G35860.1); Has 1194 Blast hits to 1139 proteins in 270 species: Archae - 8; Bacteria - 524; Metazoa - 184; Fungi - 15; Plants - 237; Viruses - 3; Other Eukaryotes - 223 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2335eggNOG:KOG1437EMBL:AK117608EMBL:AL132972
EMBL:BT026127EMBL:CP002686EnsemblPlants:AT3G52370EnsemblPlants:AT3G52370.1
entrez:824402Gene3D:2.30.180.10GeneID:824402Genevisible:Q9FT45
GO:GO:0005576Gramene:AT3G52370.1hmmpanther:PTHR32499hmmpanther:PTHR32499:SF3
HOGENOM:HOG000240476InParanoid:Q9FT45InterPro:IPR000782KEGG:ath:AT3G52370
OMA:VGQHNITPaxDb:Q9FT45Pfam:PF02469Pfam:Q9FT45
Pfscan:PS50213PhylomeDB:Q9FT45PIR:T08462PIR:T46107
PRIDE:Q9FT45PRO:PR:Q9FT45PROSITE:PS50213ProteinModelPortal:Q9FT45
Proteomes:UP000006548RefSeq:NP_190805.1SMART:SM00554SMR:Q9FT45
STRING:3702.AT3G52370.1SUPFAM:SSF82153TAIR:AT3G52370tair10-symbols:FLA15
UniGene:At.22262UniGene:At.27492UniProt:Q9FT45
Coordinates (TAIR10) chr3:+:19417549..19419549
Molecular Weight (calculated) 48075.80 Da
IEP (calculated) 6.68
GRAVY (calculated) -0.28
Length 436 amino acids
Sequence (TAIR10)
(BLAST)
001: MDDLSKLLFF LLLTISITTA LPDKPGSGQI NSNSVLVALL DSHYTELAEL VEKALLLQTL EEAVGQHNIT IFAPRNDALE KNLDPEFKSF LLQPKNLKSL
101: QSLLMFHILP KRITSPQFSS AVVSHRTLSN DHLHFTNGKV NSAEITKPDD LTRPDGIIHG IERLLIPRSV QEDFNRRRSL RSIAAVLPEG APEVDPRTHR
201: LKKKPAPIPA GAPPVLPVYD AMSPGPSLAP APAPGPGGPR HHFNGEAQVK DFIHTLLHYG GYNEMADILV NLTSLATEMG RLVSEGYVLT VLAPNDEAMA
301: KLTTDQLSEP GAPEQIMYYH IIPEYQTEES MYNSVRRFGK IRYDSLRFPH KVEAQEADGS VKFGHGDGSA YLFDPDIYTD GRISVQGIDG VLFPEEKTPV
401: EKKTGVPVVK KAPKPRRGKL MEVACTMLGS QFPTCQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)