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AT5G15740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.985
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : O-fucosyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT3G02250.1); Has 822 Blast hits to 815 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 822; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IENXeggNOG:ENOG410Y216EMBL:AK227710EMBL:BT023458
EMBL:CP002688EnsemblPlants:AT5G15740EnsemblPlants:AT5G15740.1entrez:831430
GeneID:831430GO:GO:0016757Gramene:AT5G15740.1hmmpanther:PTHR31741
hmmpanther:PTHR31741:SF17HOGENOM:HOG000240134InterPro:IPR019378InterPro:IPR024709
KEGG:00514+2.4.1.221KEGG:ath:AT5G15740OMA:MIRAVTVPfam:PF10250
PhylomeDB:Q4V398PIRSF:PIRSF009360Proteomes:UP000006548RefSeq:NP_197078.2
STRING:3702.AT5G15740.1TAIR:AT5G15740TMHMM:TMhelixUniGene:At.10157
unipathway:UPA00378UniProt:Q4V398
Coordinates (TAIR10) chr5:-:5134788..5136956
Molecular Weight (calculated) 59044.30 Da
IEP (calculated) 9.34
GRAVY (calculated) -0.27
Length 508 amino acids
Sequence (TAIR10)
(BLAST)
001: MCKMEKFLYH RKLWEMNVKL LGESKVEKLK NSFVSRPRMS LWMIRAVTVL LLWSCFVHLM ALGEMWGPRL FKGWPSCFNH HQLSTAAEMT SLPTKIALPP
101: KRVYVNNGYL MVSCNGGLNQ MRAAICDMVT VARYMNVTLI VPELDKTSFW NDPSEFKDIF DVDHFISSLR DEVRILKELP PRLKKRVELG VYHEMPPISW
201: SNMSYYQNQI LPLVKKHKVL HLNRTDTRLA NNGLPVEVQK LRCRVNFNGL KFTPQIEELG RRVVKILREK GPFLVLHLRY EMDMLAFSGC SHGCNPEEEE
301: ELTRMRYAYP WWKEKVINSE LKRKDGLCPL TPEETALTLT ALGIDRNVQI YIAAGEIYGG QRRMKALTDA FPNVVRKETL LESSDLDFCR NHSSQMAALD
401: YLVALESDIF VPTNDGNMAR VVEGHRRFLG FKKTIQLNRR FLVKLIDEYT EGLLSWDVFS STVKAFHSTR MGSPKRRLVI PNRPKEEDYF YANPQECLQL
501: LDEPLRVI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)