AT3G06035.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Glycoprotein membrane precursor GPI-anchored | ||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Glycoprotein membrane precursor GPI-anchored; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Glycoprotein membrane precursor GPI-anchored (TAIR:AT5G19250.1); Has 86 Blast hits to 85 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:1823172..1824110 | ||||||||||||||||||||||||||||
Molecular Weight (calculated) | 22054.30 Da | ||||||||||||||||||||||||||||
IEP (calculated) | 4.25 | ||||||||||||||||||||||||||||
GRAVY (calculated) | 0.02 | ||||||||||||||||||||||||||||
Length | 200 amino acids | ||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAIDKLPLLL FLSILLCLNR PVLSDTDEED ILLTGINSYR TTQNLTILSK NENAECLADE IADQFKNKPC TNDTGSATVP GTEPQFANYP QILAKCHLNV 101: SDTRDGSIMP ACVPRLESNL VLTNFTKSQY SMSLNDSKFT GIGIGKEDDW IVVVLTTNTP EGSYSTATPT KQESNGFTFG IGLVSYLVIF MYSSFCFFLF |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)