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AT5G22740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cellulose synthase-like A02
Curator
Summary (TAIR10)
encodes a beta-mannan synthase based on in vitro enzyme assays from heterologously expressed protein
Computational
Description (TAIR10)
cellulose synthase-like A02 (CSLA02); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT5G03760.1); Has 5133 Blast hits to 5129 proteins in 1484 species: Archae - 200; Bacteria - 4017; Metazoa - 35; Fungi - 91; Plants - 482; Viruses - 11; Other Eukaryotes - 297 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1215eggNOG:ENOG410IKNSEMBL:KJ138672EnsemblPlants:AT5G22740
EnsemblPlants:AT5G22740.1entrez:832337ExpressionAtlas:W8PUD8Gene3D:3.90.550.10
GeneID:832337GO:GO:0016021GO:GO:0016740Gramene:AT5G22740.1
hmmpanther:PTHR32044hmmpanther:PTHR32044:SF17HOGENOM:HOG000238309InterPro:IPR029044
KEGG:ath:AT5G22740KO:K13680OMA:CIVMELMPaxDb:W8PUD8
Pfam:PF13641Pfam:Q9FNI7PhylomeDB:W8PUD8ProteinModelPortal:Q9FNI7
ProteinModelPortal:W8PUD8RefSeq:NP_197666.1SMR:W8PUD8STRING:3702.AT5G22740.1
SUPFAM:SSF53448tair10-symbols:ATCSLA02tair10-symbols:ATCSLA2tair10-symbols:CSLA02
tair10-symbols:CSLA2TMHMM:TMhelixUniGene:At.8431UniProt:Q9FNI7
UniProt:W8PUD8
Coordinates (TAIR10) chr5:-:7555379..7559866
Molecular Weight (calculated) 61561.70 Da
IEP (calculated) 9.40
GRAVY (calculated) 0.16
Length 534 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGVSPKFVL PETFDGVRME ITGQLGMIWE LVKAPVIVPL LQLAVYICLL MSVMLLCERV YMGIVIVLVK LFWKKPDKRY KFEPIHDDEE LGSSNFPVVL
101: VQIPMFNERE VYKLSIGAAC GLSWPSDRLV IQVLDDSTDP TVKQMVEVEC QRWASKGINI RYQIRENRVG YKAGALKEGL KRSYVKHCEY VVIFDADFQP
201: EPDFLRRSIP FLMHNPNIAL VQARWRFVNS DECLLTRMQE MSLDYHFTVE QEVGSSTHAF FGFNGTAGIW RIAAINEAGG WKDRTTVEDM DLAVRASLRG
301: WKFLYLGDLQ VKSELPSTFR AFRFQQHRWS CGPANLFRKM VMEIVRNKKV RFWKKVYVIY SFFFVRKIIA HWVTFCFYCV VLPLTILVPE VKVPIWGSVY
401: IPSIITILNS VGTPRSIHLL FYWILFENVM SLHRTKATLI GLFEAGRANE WVVTAKLGSG QSAKGNTKGI KRFPRIFKLP DRLNTLELGF AAFLFVCGCY
501: DFVHGKNNYF IYLFLQTMSF FISGLGWIGT YVPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)