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AT4G13990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.824
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Exostosin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT2G20370.1); Has 564 Blast hits to 563 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 547; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
CAZy:GT47EC:2.4.1.-eggNOG:ENOG410XTFHeggNOG:KOG1021
EMBL:AL161537EMBL:BT006172EMBL:CP002687EMBL:KJ138760
EMBL:Z97335EnsemblPlants:AT4G13990EnsemblPlants:AT4G13990.1entrez:827035
GeneID:827035GO:GO:0005618GO:GO:0005794GO:GO:0016021
GO:GO:0016757Gramene:AT4G13990.1hmmpanther:PTHR11062hmmpanther:PTHR11062:SF110
HOGENOM:HOG000239726InterPro:IPR004263KEGG:ath:AT4G13990OMA:LCFDYSA
PaxDb:Q84R16Pfam:PF03016PhylomeDB:Q84R16PIR:H71400
ProteinModelPortal:Q84R16Proteomes:UP000006548RefSeq:NP_193135.2STRING:3702.AT4G13990.1
TAIR:AT4G13990TMHMM:TMhelixUniGene:At.48856UniProt:Q84R16
Coordinates (TAIR10) chr4:+:8084395..8085960
Molecular Weight (calculated) 60994.10 Da
IEP (calculated) 5.74
GRAVY (calculated) -0.50
Length 521 amino acids
Sequence (TAIR10)
(BLAST)
001: MRPKNYSQME KPISITTGKF RTNNNNNHNN VWFVVPLFFI LCFVLLCFDY SALFTDTDET AFSIPDVTQK STSSEFTKDD NFSRFPDDPS PDSSCSGRYI
101: YVHELPYRFN GDLLDNCFKI TRGTEKDICP YIENYGFGPV IKNYENVLLK QSWFTTNQFM LEVIFHNKMI NYRCLTNDSS LASAVFVPFY AGLDMSRYLW
201: GFNITVRDSS SHELMDWLVV QKEWGRMSGR DHFLVSGRIA WDFRRQTDNE SDWGSKLRFL PESRNMSMLS IESSSWKNDY AIPYPTCFHP RSVDEIVEWQ
301: ELMRSRKREY LFTFAGAPRP EYKDSVRGKI IDECLESKKQ CYLLDCNYGN VNCDNPVNVM KVFRNSVFCL QPPGDSYTRR SMFDSILAGC IPVFFHPGTA
401: YAQYKWHLPK NHSSYSVYLP VKDVKEWNIK IKERLIEIPE ERVVRLREEV IRLIPKVVYA DPKYGSDGSE DAFELAVKGM LERIEEVREM MRQGKDGSDG
501: FDDRDDYKYT FSPYEEPQVL A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)