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AT2G40150.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TRICHOME BIREFRINGENCE-LIKE 28
Curator
Summary (TAIR10)
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational
Description (TAIR10)
TRICHOME BIREFRINGENCE-LIKE 28 (TBL28); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT3G55990.1); Has 1332 Blast hits to 1305 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1332; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JWIQeggNOG:ENOG41104W6EMBL:AF085279EMBL:AF370500
EMBL:BT003422EMBL:CP002685EnsemblPlants:AT2G40150EnsemblPlants:AT2G40150.1
entrez:818606GeneID:818606Genevisible:Q94K00GO:GO:0016021
GO:GO:0050826Gramene:AT2G40150.1hmmpanther:PTHR32285hmmpanther:PTHR32285:SF10
HOGENOM:HOG000238066InParanoid:Q94K00InterPro:IPR025846InterPro:IPR026057
InterPro:IPR029962InterPro:IPR029979KEGG:ath:AT2G40150OMA:DDGDTEY
PANTHER:PTHR32285PANTHER:PTHR32285:SF10PaxDb:Q94K00Pfam:PF13839
Pfam:PF14416Pfam:Q94K00PhylomeDB:Q94K00PIR:H84825
PRO:PR:Q94K00Proteomes:UP000006548RefSeq:NP_030560.1TAIR:AT2G40150
tair10-symbols:TBL28TMHMM:TMhelixUniGene:At.24160UniProt:Q94K00
Coordinates (TAIR10) chr2:+:16775511..16777141
Molecular Weight (calculated) 49406.70 Da
IEP (calculated) 5.91
GRAVY (calculated) -0.30
Length 424 amino acids
Sequence (TAIR10)
(BLAST)
001: MQPSRTRVSF FETGETMKQR KKSYLSIFVI FFSLFFFGIF MYNDNLKSSI ADFTSSNPFS SSFVELPPDE CDLFTGQWVF DNKTYPLYKE EECEFLTEQV
101: TCLRNGRKDS LFQNWRWQPR DCSLPKFNAR VLLEKLRNKR LMFVGDSLNR NQWESMVCLV QSVIPPGRKS LNQTGSLTVF KIQDYNATVE FYWAPFLVES
201: NSDDPEKHSI IDRIIMPESI EKHGVNWIGV DFLVFNSYIW WMNTVSIKVL RGSFDDGDTE YDEIKRPIAY ERVLRTLGDW VDHNIDPLST TVFFMSMSPL
301: HIKSSDWANP EGIRCALETT PILNMSFNVA YGQFSAVGTD YRLFPVAENV TQSLKVPIHF LNITALSEYR KDAHTSVYTI KQGKLLTREQ QNDPANFADC
401: IHWCLPGLPD TWNEFLYTHI ISRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)