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AT1G56670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G09390.1); Has 3420 Blast hits to 3380 proteins in 199 species: Archae - 0; Bacteria - 256; Metazoa - 0; Fungi - 41; Plants - 3110; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G56670-MONOMEREC:3.1.1.-eggNOG:ENOG410IK3DeggNOG:ENOG410YG8Q
EMBL:AC009323EMBL:CP002684EMBL:U57828EnsemblPlants:AT1G56670
EnsemblPlants:AT1G56670.1entrez:842122Gene3D:3.40.50.1110GeneID:842122
Genevisible:Q9FXB6GO:GO:0005576GO:GO:0016042GO:GO:0016788
Gramene:AT1G56670.1hmmpanther:PTHR22835hmmpanther:PTHR22835:SF275HOGENOM:HOG000237648
InParanoid:Q9FXB6InterPro:IPR001087InterPro:IPR013830KEGG:ath:AT1G56670
OMA:IGQNDVNPaxDb:Q9FXB6Pfam:PF00657Pfam:Q9FXB6
PhylomeDB:Q9FXB6PIR:D96608PIR:T52366PRIDE:Q9FXB6
PRO:PR:Q9FXB6ProteinModelPortal:Q9FXB6Proteomes:UP000006548RefSeq:NP_176059.1
STRING:3702.AT1G56670.1TAIR:AT1G56670TMHMM:TMhelixUniGene:At.42731
UniProt:Q9FXB6
Coordinates (TAIR10) chr1:+:21241688..21243965
Molecular Weight (calculated) 41578.10 Da
IEP (calculated) 9.69
GRAVY (calculated) -0.08
Length 373 amino acids
Sequence (TAIR10)
(BLAST)
001: MATLFLYSNT FSFFFITLVS LALLILRQPS RAASCTARPV IFNFGDSNSD TGGLVAGLGY PIGFPNGRLF FRRSTGRLSD GRLLIDFLCQ SLNTSLLRPY
101: LDSLGRTRFQ NGANFAIAGS PTLPKNVPFS LNIQVKQFSH FKSRSLELAS SSNSLKGMFI SNNGFKNALY MIDIGQNDIA RSFARGNSYS QTVKLIPQII
201: TEIKSSIKRL YDEGGRRFWI HNTGPLGCLP QKLSMVKSKD LDQHGCLVSY NSAATLFNQG LDHMCEELRT ELRDATIIYI DIYAIKYSLI ANSNQYGFKS
301: PLMACCGYGG TPYNYNVKIT CGHKGSNVCE EGSRFISWDG IHYTETANAI VAMKVLSMHY SKPPTPFHFF CRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)