AT1G41830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SKU5-similar 6 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SKU5-similar 6 (SKS6); FUNCTIONS IN: pectinesterase activity; INVOLVED IN: oxidation reduction; LOCATED IN: apoplast, cell wall, membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 3 (InterPro:IPR011707), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 5 (TAIR:AT1G76160.1); Has 4991 Blast hits to 4914 proteins in 848 species: Archae - 16; Bacteria - 1377; Metazoa - 295; Fungi - 1862; Plants - 1313; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:15603892..15607802 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60581.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.71 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 542 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMAVGRSGGT ILLFCLSFFA AVTAESPYRF FDWNVTYGDI YPLGVRQQGI LINGQFPGPD IHSVTNDNLI INVHNSLDEP FLISWNGVQN RRNSYVDGMY 101: GTTCPIPPRS NYTYILQVKD QIGSFYYFPS LAFHKAAGGF GGIRILSRPG IPVPFADPAG DYTVLIGDWY KFNHTDLKSR LDRGRKLPSP DGILINGRSN 201: GATLNVEQGK TYRLRISNVG LQDSLNFRIQ NHRMKLVEVE GTHTLQTMFS SLDVHVGQSY SVLITADQSP RDYYVVVSSR FTDKIITTTG VLRYSGSSTP 301: ASGPIPGGPT IQVDWSLNQA RAIRTNLTAS GPRPNPQGSY HYGLIPLIRT IVFGSSAGQI NGKQRYGVNS VSFVPADTPL KLADFFKISG VYKINSISDK 401: PTYGGLYLDT SVLQVDYRTF IEIVFENQED IVQSYHLNGY SFWVVGMDGG QWKTGSRNGY NLRDAVSRST VQVYPKSWTA IYIALDNVGM WNLRSEFWAR 501: QYLGQQLYLR VFTSSTSLRD EYPIPKNSRL CGRARGRHTR PL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)