suba logo
AT1G04680.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G13710.1); Has 1635 Blast hits to 1625 proteins in 268 species: Archae - 0; Bacteria - 682; Metazoa - 0; Fungi - 239; Plants - 706; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G04680-MONOMERBioGrid:24687CAZy:PL1EC:4.2.2.2
eggNOG:COG3866eggNOG:ENOG410JTUDEMBL:AC002376EMBL:AY054200
EMBL:AY065034EMBL:AY066033EMBL:AY087724EMBL:CP002684
EMBL:U83620EnsemblPlants:AT1G04680EnsemblPlants:AT1G04680.1entrez:839452
Gene3D:2.160.20.10GeneID:839452Genevisible:Q940Q1GO:GO:0016020
GO:GO:0030570GO:GO:0045490GO:GO:0046872Gramene:AT1G04680.1
hmmpanther:PTHR31683hmmpanther:PTHR31683:SF20HOGENOM:HOG000237948InParanoid:Q940Q1
InterPro:IPR002022InterPro:IPR011050InterPro:IPR012334InterPro:IPR018082
KEGG:00040+4.2.2.2KEGG:ath:AT1G04680KO:K01728OMA:EWNQHAV
PaxDb:Q940Q1Pfam:PF00544Pfam:Q940Q1PhylomeDB:Q940Q1
PIR:F86179PRIDE:Q940Q1PRINTS:PR00807PRO:PR:Q940Q1
ProteinModelPortal:Q940Q1Proteomes:UP000006548RefSeq:NP_563715.1SMART:SM00656
SMR:Q940Q1STRING:3702.AT1G04680.1SUPFAM:SSF51126TAIR:AT1G04680
UniGene:At.10458UniPathway:UPA00545UniProt:Q940Q1
Coordinates (TAIR10) chr1:-:1304052..1307780
Molecular Weight (calculated) 47773.40 Da
IEP (calculated) 7.97
GRAVY (calculated) -0.37
Length 431 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVLPTWLLA MMCLLFFVGA MENTTHDNIS SLPRSDETEW NQHAVTNPDE VADEVLALTE MSVRNHTERR KLGYFTCGTG NPIDDCWRCD PNWHKNRKRL
101: ADCGIGFGRN AIGGRDGRFY VVTDPRDDNP VNPRPGTLRH AVIQDRPLWI VFKRDMVIQL KQELIVNSFK TIDGRGANVH IANGGCITIQ FVTNVIVHGL
201: HIHDCKPTGN AMVRSSETHF GWRTMADGDA ISIFGSSHVW IDHNSLSHCA DGLVDAVMGS TAITISNNHL THHNEVMLLG HSDSYMRDKA MQVTIAYNHF
301: GVGLIQRMPR CRHGYFHVVN NDYTHWEMYA IGGSANPTIN SQGNRYAAPK NPFAKEVTKR VDTPASHWKG WNWRSEGDLL QNGAYFTSSG AAASGSYARA
401: SSLSAKSSSL VGHITSDAGA LPCRRGRQCS S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)