suba logo
AT5G47330.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: palmitoyl-(protein) hydrolase activity; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Palmitoyl protein thioesterase (InterPro:IPR002472); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G47340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G47330-MONOMEReggNOG:COG1075eggNOG:KOG2541EMBL:AB018117
EMBL:BT020407EMBL:BT020483EMBL:CP002688EnsemblPlants:AT5G47330
EnsemblPlants:AT5G47330.1entrez:834780ESTHER:arath-At5g47330Gene3D:3.40.50.1820
GeneID:834780GO:GO:0098599Gramene:AT5G47330.1gramene_pathway:3.1.2.2
gramene_pathway:PWY-5148hmmpanther:PTHR11247hmmpanther:PTHR11247:SF26InterPro:IPR002472
InterPro:IPR029058KEGG:ath:AT5G47330KO:K01074OMA:NARDANF
Pfam:PF02089PhylomeDB:Q9LVS6Proteomes:UP000006548Reactome:R-ATH-75876
RefSeq:NP_199544.1SMR:Q9LVS6STRING:3702.AT5G47330.1SUPFAM:SSF53474
TAIR:AT5G47330TMHMM:TMhelixUniGene:At.29899UniProt:Q9LVS6
Coordinates (TAIR10) chr5:+:19207170..19208711
Molecular Weight (calculated) 34531.60 Da
IEP (calculated) 7.20
GRAVY (calculated) -0.12
Length 314 amino acids
Sequence (TAIR10)
(BLAST)
001: MGEKGLKRSG VAVVVALLAM VHVSVSVPFI MLHGISAQCS NARDANFTQL LTNLSGSPGF CLEIGNGVAD SWLMPLTRQA EIACEKVKQM KELSQGYNIV
101: GRSQGNLVAR GLIEFCDGGP PVYNYISLAG PHAGISSVPM CGSGLFCKLA DELIKGDIYS DFIQDHLAPS GYLKIPTDMT KYLGSSKYLP KLNNEIPDQR
201: NQTYKDRFTS LHNLVLIKFQ GDKVIVPKDS SWFGFYPDGE FEPLLSAQQT KLYTEDWIGL KTLDDAGKVK FVSVAGEHIR MVDEDVVKHV VPYLQDQPSS
301: VQSFNRKTKQ PLHA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)