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AT4G28140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT2G20880.1); Has 5994 Blast hits to 5727 proteins in 260 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 2; Plants - 5958; Viruses - 2; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
BioGrid:14216eggNOG:ENOG410IE06eggNOG:ENOG410YGYWEMBL:AL161572
EMBL:AY074574EMBL:AY097394EMBL:CP002687EMBL:DQ011579
EnsemblPlants:AT4G28140EnsemblPlants:AT4G28140.1entrez:828929Gene3D:3.30.730.10
GeneID:828929Genevisible:Q9M0J3GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0009873GO:GO:0010200
Gramene:AT4G28140.1hmmpanther:PTHR31657hmmpanther:PTHR31657:SF9HOGENOM:HOG000112388
InParanoid:Q9M0J3InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT4G28140
KO:K09286OMA:AFKLRGHPaxDb:Q9M0J3Pfam:PF00847
Pfam:Q9M0J3Pfscan:PS51032PhylomeDB:Q9M0J3PIR:T09030
PRIDE:Q9M0J3PRINTS:PR00367PRO:PR:Q9M0J3PROSITE:PS51032
ProteinModelPortal:Q9M0J3Proteomes:UP000006548RefSeq:NP_194543.1SMART:SM00380
SMR:Q9M0J3STRING:3702.AT4G28140.1SUPFAM:SSF54171TAIR:AT4G28140
UniGene:At.32043UniGene:At.72101UniProt:Q9M0J3
Coordinates (TAIR10) chr4:-:13974905..13975783
Molecular Weight (calculated) 33405.00 Da
IEP (calculated) 5.43
GRAVY (calculated) -0.88
Length 292 amino acids
Sequence (TAIR10)
(BLAST)
001: MDFDEELNLC ITKGKNVDHS FGGEASSTSP RSMKKMKSPS RPKPYFQSSS SPYSLEAFPF SLDPTLQNQQ QQLGSYVPVL EQRQDPTMQG QKQMISFSPQ
101: QQQQQQQYMA QYWSDTLNLS PRGRMMMMMS QEAVQPYIAT KLYRGVRQRQ WGKWVAEIRK PRSRARLWLG TFDTAEEAAM AYDRQAFKLR GHSATLNFPE
201: HFVNKESELH DSNSSDQKEP ETPQPSEVNL ESKELPVIDV GREEGMAEAW YNAITSGWGP ESPLWDDLDS SHQFSSESSS SSPLSCPMRP FF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)