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AT4G18170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : WRKY DNA-binding protein 28
Curator
Summary (TAIR10)
member of WRKY Transcription Factor; Group II-c
Computational
Description (TAIR10)
WRKY DNA-binding protein 28 (WRKY28); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY group IIc (InterPro:IPR017396); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 8 (TAIR:AT5G46350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:12835eggNOG:ENOG410JA2MeggNOG:ENOG410ZKP8EMBL:AF442393
EMBL:AL021713EMBL:AL161548EMBL:AY070761EMBL:AY116943
EMBL:CP002687EnsemblPlants:AT4G18170EnsemblPlants:AT4G18170.1entrez:827542
Gene3D:2.20.25.80GeneID:827542Genevisible:Q8VWJ2GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0043565Gramene:AT4G18170.1
hmmpanther:PTHR31221hmmpanther:PTHR31221:SF19HOGENOM:HOG000238090InParanoid:Q8VWJ2
InterPro:IPR003657InterPro:IPR017396iPTMnet:Q8VWJ2KEGG:ath:AT4G18170
OMA:FRTAAYTPaxDb:Q8VWJ2Pfam:PF03106Pfam:Q8VWJ2
Pfscan:PS50811PhylomeDB:Q8VWJ2PIR:T04919PIRSF:PIRSF038130
PRIDE:Q8VWJ2PRO:PR:Q8VWJ2PROSITE:PS50811ProteinModelPortal:Q8VWJ2
Proteomes:UP000006548RefSeq:NP_193551.1SMART:SM00774SMR:Q8VWJ2
STRING:3702.AT4G18170.1SUPFAM:0050605SUPFAM:SSF118290TAIR:AT4G18170
tair10-symbols:ATWRKY28tair10-symbols:WRKY28UniGene:At.27349UniProt:Q8VWJ2
Coordinates (TAIR10) chr4:+:10061508..10062691
Molecular Weight (calculated) 35564.90 Da
IEP (calculated) 7.60
GRAVY (calculated) -0.91
Length 318 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNETRDLYN YQYPSSFSLH EMMNLPTSNP SSYGNLPSQN GFNPSTYSFT DCLQSSPAAY ESLLQKTFGL SPSSSEVFNS SIDQEPNRDV TNDVINGGAC
101: NETETRVSPS NSSSSEADHP GEDSGKSRRK RELVGEEDQI SKKVGKTKKT EVKKQREPRV SFMTKSEVDH LEDGYRWRKY GQKAVKNSPY PRSYYRCTTQ
201: KCNVKKRVER SFQDPTVVIT TYEGQHNHPI PTNLRGSSAA AAMFSADLMT PRSFAHDMFR TAAYTNGGSV AAALDYGYGQ SGYGSVNSNP SSHQVYHQGG
301: EYELLREIFP SIFFKQEP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)