AT4G21440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MYB-like 102 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a MYB transcription factor involved in wounding and osmotic stress response. Member of the R2R3 factor gene family. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
MYB-like 102 (MYB102); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 74 (TAIR:AT4G05100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:11418425..11419652 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40168.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.94 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.75 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 350 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARSPCCEKN GLKKGPWTSE EDQKLVDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY LRPDIKRGRF SFEEEETIIQ LHSFLGNKWS AIAARLPGRT 101: DNEIKNFWNT HIRKKLLRMG IDPVTHSPRL DLLDISSILA SSLYNSSSHH MNMSRLMMDT NRRHHQQHPL VNPEILKLAT SLFSQNQNQN LVVDHDSRTQ 201: EKQTVYSQTG VNQYQTNQYF ENTITQELQS SMPPFPNEAR QFNNMDHHFN GFGEQNLVST STTSVQDCYN PSFNDYSSSN FVLDPSYSDQ SFNFANSVLN 301: TPSSSPSPTT LNSSYINSSS CSTEDEIESY CSNLMKFDIP DFLDVNGFII |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)