AT1G05100.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.547 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : mitogen-activated protein kinase kinase kinase 18 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
member of MEKK subfamily | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
mitogen-activated protein kinase kinase kinase 18 (MAPKKK18); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase kinase kinase 17 (TAIR:AT2G32510.1); Has 120072 Blast hits to 118882 proteins in 4556 species: Archae - 119; Bacteria - 13343; Metazoa - 45257; Fungi - 11715; Plants - 30592; Viruses - 483; Other Eukaryotes - 18563 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr1:+:1469679..1470698 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 37744.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.71 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 339 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MNWTRGKTLG RGSTATVSAA TCHESGETLA VKSAEFHRSE FLQREAKILS SLNSPYVIGY RGCEITREPF HNNGEATTYS LLMEYAPYGT LTDVATKNGG 101: FIDEARVVKY TRQILLGLEY IHNSKGIAHC DIKGSNVLVG ENGEAKIADF GCAKWVEPEI TEPVRGTPAF MAPEAARGER QGKESDIWAV GCTVIEMVTG 201: SQPWIGADFT DPVSVLYRVG YLGELPELPC SLTEQAKDFL GKCLKKEATE RWTASQLLNH PFLVNKEPEL VTGLVTNSPT SVTDQMFWRS VEEEVSEDRS 301: SWWECHEDER IGVLSWIGHV VVESTWDLDG EDWITVRRN |
||||||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)