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AT5G50360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXU5eggNOG:ENOG410YJ5TEMBL:AB012248EMBL:AF370321
EMBL:AY063109EMBL:AY084315EMBL:CP002688EnsemblPlants:AT5G50360
EnsemblPlants:AT5G50360.1entrez:835103GeneID:835103Gramene:AT5G50360.1
hmmpanther:PTHR33595hmmpanther:PTHR33595:SF3HOGENOM:HOG000090359KEGG:ath:AT5G50360
OMA:GNDMSKVPhylomeDB:Q9FK36Proteomes:UP000006548RefSeq:NP_199847.1
STRING:3702.AT5G50360.1TAIR:AT5G50360UniGene:At.6854UniProt:Q9FK36
Coordinates (TAIR10) chr5:-:20505433..20506308
Molecular Weight (calculated) 32297.30 Da
IEP (calculated) 8.82
GRAVY (calculated) -0.65
Length 291 amino acids
Sequence (TAIR10)
(BLAST)
001: MNFRGGCCIA RYGGSGGGND MSKVDRIMLR YRPIAPRPDS GGSPASPTEK NGSVITNVSS RSRRGKRKYS KENNSSSTGS VNSNGNSKRQ RNDETKNGSG
101: GGREIVTLPL LPETPEKKDS PLKAKAAPEL GAAALWLSFN DGASYNRRYQ TELMTETVVS SLLTVECVTE RLMEGEYELG CTDEERKMNL ERDTCPGFIS
201: DGLGRVIWTN GSYRELVVGK DHEQCSKMSV WLVMKEKPLV TYRTFTCRMR LQYTCRDKEV SSITSFCDVW RMSDGGFAWR LDVDAALCLG R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)