AT5G52300.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CAP160 protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a protein that is induced in expression in response to water deprivation such as cold, high-salt, and dessication. The response appears to be via abscisic acid. The promoter region contains two ABA-responsive elements (ABREs) that are required for the dehydration-responsive expression of rd29B as cis-acting elements. Protein is a member of a gene family with other members found plants, animals and fungi. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
LOW-TEMPERATURE-INDUCED 65 (LTI65); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water deprivation, response to salt stress, response to cold, abscisic acid mediated signaling pathway, response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf, seed; EXPRESSED DURING: dry seed stage, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: CAP160 (InterPro:IPR012418); BEST Arabidopsis thaliana protein match is: CAP160 protein (TAIR:AT4G25580.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:21237205..21239404 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65974.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.81 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.97 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 619 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESQLTRPYG HEQAEEPIRI HHPEEEEHHE KGASKVLKKV KEKAKKIKNS LTKHGNGHDH DVEDDDDEYD EQDPEVHGAP VYESSAVRGG VTGKPKSLSH 101: AGETNVPASE EIVPPGTKVF PVVSSDHTKP IEPVSLQDTS YGHEALADPV RTTETSDWEA KREAPTHYPL GVSEFSDRGE SREAHQEPLN TPVSLLSATE 201: DVTRTFAPGG EDDYLGGQRK VNVETPKRLE EDPAAPGGGS DYLSGVSNYQ SKVTDPTHKG GEAGVPEIAE SLGRMKVTDE SPDQKSRQGR EEDFPTRSHE 301: FDLKKESDIN KNSPARFGGE SKAGMEEDFP TRGDVKVESG LGRDLPTGTH DQFSPELSRP KERDDSEETK DESTHETKPS TYTEQLASAT SAITNKAIAA 401: KNVVASKLGY TGENGGGQSE SPVKDETPRS VTAYGQKVAG TVAEKLTPVY EKVKETGSTV MTKLPLSGGG SGVKETQQGE EKGVTAKNYI SEKLKPGEED 501: KALSEMIAEK LHFGGGGEKK TTATKEVEVT VEKIPSDQIA EGKGHGEAVA EEGKGGEGMV GKVKGAVTSW LGGKPKSPRS VEESPQSLGT TVGTMGFSDS 601: GGSELGGSGG GKGVQDSGN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)