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AT2G47770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.500
golgi 0.500
ASURE: endoplasmic reticulum,golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TSPO(outer membrane tryptophan-rich sensory protein)-related
Curator
Summary (TAIR10)
Encodes a membrane-bound protein designated AtTSPO (Arabidopsis thaliana TSPO-related). AtTSPO is related to the bacterial outer membrane tryptophan-rich sensory protein (TspO) and the mammalian mitochondrial 18 kDa Translocator Protein (18 kDa TSPO), members of the TspO/MBR domain-containing membrane proteins. Mainly detected in dry seeds, but can be induced in vegetative tissues by osmotic or salt stress or abscisic acid treatment. Located in endoplasmic reticulum and the Golgi stacks.
Computational
Description (TAIR10)
TSPO(outer membrane tryptophan-rich sensory protein)-related (TSPO); CONTAINS InterPro DOMAIN/s: TspO/MBR-related protein (InterPro:IPR004307); Has 567 Blast hits to 567 proteins in 188 species: Archae - 24; Bacteria - 226; Metazoa - 151; Fungi - 6; Plants - 53; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
Protein Annotations
BioGrid:4724eggNOG:ENOG410IXPKeggNOG:ENOG410YY8XEMBL:AC005309
EMBL:AF428356EMBL:AY045981EMBL:AY079391EMBL:CP002685
EnsemblPlants:AT2G47770EnsemblPlants:AT2G47770.1entrez:819389GeneID:819389
Genevisible:O82245GO:GO:0000139GO:GO:0005783GO:GO:0005789
GO:GO:0005794GO:GO:0005795GO:GO:0006778GO:GO:0006810
GO:GO:0006970GO:GO:0009651GO:GO:0009737GO:GO:0016020
GO:GO:0016021GO:GO:0020037GO:GO:0031969Gramene:AT2G47770.1
hmmpanther:PTHR10057hmmpanther:PTHR10057:SF0HOGENOM:HOG000077445InParanoid:O82245
IntAct:O82245InterPro:IPR004307KEGG:ath:AT2G47770OMA:GDLVKPC
PANTHER:PTHR10057PaxDb:O82245Pfam:O82245Pfam:PF03073
PhylomeDB:O82245PIR:C84919PRIDE:O82245PRO:PR:O82245
ProteinModelPortal:O82245Proteomes:UP000006548RefSeq:NP_566110.1SMR:O82245
STRING:3702.AT2G47770.1TAIR:AT2G47770tair10-symbols:ATTSPOtair10-symbols:TSPO
TCDB:9.A.24.1.3TMHMM:TMhelixUniGene:At.23206UniProt:O82245
Coordinates (TAIR10) chr2:+:19568701..19569291
Molecular Weight (calculated) 21063.50 Da
IEP (calculated) 9.64
GRAVY (calculated) 0.22
Length 196 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSQDIRYRG GDDRDAATTA MAETERKSAD DNKGKRDQKR AMAKRGLKSL TVAVAAPVLV TLFATYFLGT SDGYGNRAKS SSWIPPLWLL HTTCLASSGL
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFLL CLVWDPVTFR VGSGVAGLAV WLGQSAALFG CYKAFNEISP VAGNLVKPCL AWAAFVAAVN VKLAVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)