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AT2G35300.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.351
golgi 0.343
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Late embryogenesis abundant protein, group 1 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Late embryogenesis abundant protein, group 1 protein; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 1 (InterPro:IPR005513); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein, group 1 protein (TAIR:AT1G32560.1); Has 129 Blast hits to 129 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:818097eggNOG:ENOG410J7GCeggNOG:ENOG410ZCGZEMBL:AC004667
EMBL:AY072383EMBL:AY114622EMBL:CP002685EMBL:X91917
EnsemblPlants:AT2G35300EnsemblPlants:AT2G35300.1entrez:818097GeneID:818097
GO:GO:0005829GO:GO:0006970GO:GO:0009414GO:GO:0009790
GO:GO:0048316GO:GO:0048868Gramene:AT2G35300.1hmmpanther:PTHR33493
hmmpanther:PTHR33493:SF6HOGENOM:HOG000240987InterPro:IPR005513KEGG:ath:AT2G35300
ncoils:CoilOMA:KVKAKDMPfam:PF03760PhylomeDB:Q96273
PIR:H84766ProDom:PD005538Proteomes:UP000006548RefSeq:NP_181073.1
STRING:3702.AT2G35300.1TAIR:AT2G35300tair10-symbols:LEA18UniGene:At.5384
UniProt:Q96273
Coordinates (TAIR10) chr2:-:14863066..14863359
Molecular Weight (calculated) 10481.30 Da
IEP (calculated) 10.36
GRAVY (calculated) -1.16
Length 97 amino acids
Sequence (TAIR10)
(BLAST)
1: MQSAKEKISD MASTAKEKLN IGGAKAQGHA EKTMARTKKE KKLAQEREKS KEAQAKADLH QSKAEHAADA QVHGHHLPGH STYPTRATGA NYPPGQI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)