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AT3G15670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Late embryogenesis abundant protein (LEA) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Late embryogenesis abundant protein (LEA) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleus; EXPRESSED DURING: dry seed stage; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein (LEA) family protein (TAIR:AT1G52690.2); Has 12897 Blast hits to 6829 proteins in 1482 species: Archae - 30; Bacteria - 6176; Metazoa - 1239; Fungi - 638; Plants - 1871; Viruses - 111; Other Eukaryotes - 2832 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y2SYeggNOG:KOG4744EMBL:AB017071EMBL:AY040026
EMBL:AY054162EMBL:AY079410EMBL:CP002686EnsemblPlants:AT3G15670
EnsemblPlants:AT3G15670.1entrez:820810GeneID:820810GO:GO:0005634
GO:GO:0005829Gramene:AT3G15670.1hmmpanther:PTHR23241KEGG:ath:AT3G15670
OMA:THQTYQRPhylomeDB:Q9LW12ProMEX:Q9LW12Proteomes:UP000006548
RefSeq:NP_188188.1STRING:3702.AT3G15670.1TAIR:AT3G15670UniGene:At.5382
UniProt:Q9LW12
Coordinates (TAIR10) chr3:-:5310141..5310901
Molecular Weight (calculated) 24187.40 Da
IEP (calculated) 9.43
GRAVY (calculated) -1.37
Length 225 amino acids
Sequence (TAIR10)
(BLAST)
001: MASNQQSYKA GETRGKAQEK TGQAMGTMRD KAEEGRDKTS QTAQTAQQKA HETAQSAKDK TSQTAQAAQQ KAHETAQSAK EKTSQTAQTA QQKAHETTQA
101: AKEKTSQAGD KAREAKDKAG SYLSETGEAI KNKAQDAAQY TKETAQGAAQ YTKETAEAGR DKTGGFLSQT GEHVKQMAMG AADAVKHTFG MATEEEDKEH
201: YPGSTTTTTA TTRTTDPTHQ TYQRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)