AT3G53040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.583 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : late embryogenesis abundant protein, putative / LEA protein, putative | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
late embryogenesis abundant protein, putative / LEA protein, putative; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: seed; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 4 (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: embryonic cell protein 63 (TAIR:AT2G36640.1); Has 58153 Blast hits to 33178 proteins in 2866 species: Archae - 714; Bacteria - 20429; Metazoa - 14816; Fungi - 4800; Plants - 4772; Viruses - 420; Other Eukaryotes - 12202 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:19664797..19666405 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52086.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.02 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.19 | ||||||||||||||||||||||||||||||||
| Length | 479 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASGQREAER SAKAERAEAA ASLAAEDLKD INKGDVTYKL TERTTTTEPE RPGLIGSVMK AVQGTKDAVI GKSHDTAEST REGADIASEK AAGMRDTTGE 101: VRDSTAQKTK ETADYTADKA REAKDKTADK TKETADYAAE KAREAKDRTA DKTKETAEYT AEKAREAKDK TADKLGEYKD YTAEKAKEAK DTTAEKLGEY 201: KDYTVDKAKE AKDKTAEKAK ETAEYTSDKA RETKDKTAEK VGEYKDYTAE KAKETADKAR EAKDKTAEKV GEYRDYTAEK ATETKDAGVS KIGELKDSAV 301: DTAKRAMGFL SGKTEETKQK AVETKDTAKE KMDEAGEEAR RKMEEMRLEG KKLDEDASRK TQQSTESAAD KAHETKDSVA QRGEEGKGSI MGALGNMTGA 401: IKSKLTGATT PSDEETRASA HGDESTGKTV VAVDVKDTRP GYVATVLKEA DQMTGQTFND VGEIDDEEKV RIVVGEKKL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)