AT2G36640.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.998 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : embryonic cell protein 63 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes putative phosphotyrosine protein belonging to late embryogenesis abundant (LEA) protein in group 3 that might be involved in maturation and desiccation tolerance of seeds. RFLP and CAPS mapping place it on chromosome 4 but the nucleotide sequence maps it to chromosome 2. | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
embryonic cell protein 63 (ECP63); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit, seed; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 4 (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein, putative / LEA protein, putative (TAIR:AT3G53040.1); Has 29213 Blast hits to 16834 proteins in 2229 species: Archae - 326; Bacteria - 11175; Metazoa - 5508; Fungi - 2029; Plants - 3175; Viruses - 194; Other Eukaryotes - 6806 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:-:15357019..15358552 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48495.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.19 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.02 | ||||||||||||||||||||||||||||
| Length | 448 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASDKQKAER AEVAARLAAE DLHDINKSGG ADVTMYKVTE RTTEHPPEQD RPGVIGSVFR AVQGTYEHAR DAVVGKTHEA AESTKEGAQI ASEKAVGAKD 101: ATVEKAKETA DYTAEKVGEY KDYTVDKAKE AKDTTAEKAK ETANYTADKA VEAKDKTAEK IGEYKDYAVD KAVEAKDKTA EKAKETANYT ADKAKEAKDK 201: TAEKVGEYKD YTVDKAVEAR DYTAEKAIEA KDKTAEKTGE YKDYTVEKAT EGKDVTVSKL GELKDSAVET AKRAMGFLSG KTEEAKGKAV ETKDTAKENM 301: EKAGEVTRQK MEEMRLEGKE LKEEAGAKAQ EASQKTREST ESGAQKAEET KDSAAVRGNE AKGTIFGALG NVTEAIKSKL TMPSDIVEET RAAREHGGTG 401: RTVVEVKVED SKPGKVATSL KASDQMTGQT FNDVGRMDDD ARKDKGKL |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)