AT4G36600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.483 endoplasmic reticulum 0.224 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Late embryogenesis abundant (LEA) protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Late embryogenesis abundant (LEA) protein; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 4 (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant domain-containing protein / LEA domain-containing protein (TAIR:AT2G18340.1); Has 1483 Blast hits to 893 proteins in 345 species: Archae - 4; Bacteria - 836; Metazoa - 93; Fungi - 47; Plants - 352; Viruses - 1; Other Eukaryotes - 150 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:17263666..17264968 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37961.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.14 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.97 | ||||||||||||||||||||||||||||
| Length | 353 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMIMMLTTVV TLTWQKQCYG WGTETAEDMV RNEAEHAKNA AETAKKMASD AAHDTKDKTA SWAGWVSDKI STGLGGKKAE AEEAAESAKN YAYDKAGSAY 101: DNAGYAKDFA SDKAGSAYDS AHNAKHYAYD KAGDAKDMAY DKTGQAKYMA YDKAGSAYEK AGQAKDMAYD KAGQAKDMAY DKVGSAYDKA GQAKDMAYDK 201: AGSASEKAGQ AKDFAYDKAA HAKDAAYNKA EDVIKMATDT SGEAKDSAYG TYERFKEGSK NAKDIASDKA HDVRETAGRA VDYAKDKAND AYESGSEAAG 301: RFDEAMHKVG ERYGAAKDSM SENTKEAYES AKEKASDAAG EYGSYMRDRS AEL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)