AT5G44310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.771 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Late embryogenesis abundant protein (LEA) family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Late embryogenesis abundant protein (LEA) family protein; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein (LEA) family protein (TAIR:AT4G21020.1); Has 48363 Blast hits to 24499 proteins in 2419 species: Archae - 560; Bacteria - 15441; Metazoa - 12035; Fungi - 3407; Plants - 3668; Viruses - 281; Other Eukaryotes - 12971 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:17847998..17848885 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 33362.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.17 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.54 | ||||||||||||||||||||||||
| Length | 295 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MCEEISMVVD FQGRYDPVEK ARDSRADLAY DSKKWREESG EYAEAGKGKA HKTKEEAKDK AYDMKERTKD YAEQTKNKVN EGASRAADKA YETKEKAKDK 101: AYDVKEKTKD YAEEAKDKVN EGASRAADKA YETKEKAKDK AYDVKEKTKD FAEETKEKVN EGASRAADKA YDVKEKTKNY AEQTKDKVNE GASRAADKAE 201: ETKDKAKDYA EDSKEKAEDM AHGFKEKAQD IGEKTMDTVK DVWETAKSTA QKVTEAVVGS GEEADKARDD VDKGLEDLSK KAKENRNKDD DFKRF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)