AT2G42560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.671 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : late embryogenesis abundant domain-containing protein / LEA domain-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
late embryogenesis abundant domain-containing protein / LEA domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 4 (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: embryonic cell protein 63 (TAIR:AT2G36640.1); Has 15488 Blast hits to 9741 proteins in 1566 species: Archae - 82; Bacteria - 6528; Metazoa - 2119; Fungi - 827; Plants - 2067; Viruses - 138; Other Eukaryotes - 3727 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:17714813..17716821 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67199.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.97 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.98 | ||||||||||||||||||||||||||||
| Length | 635 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASEQARREN KVTEREVQVE KDRVPKMTSH FESMAEKGKD SDTHRHQTEG GGTQFVSLSD KGSNMPVSDE GEGETKMKRT QMPHSVGKFV TSSDSGTGKK 101: KDEKEEHEKA SLEDIHGYRA NAQQKSMDSI KAAEERYNKA KESLSHSGQE ARGGRGEEMV GKGRDSGVRV SHVGAVGGGG GGEEKESGVH GFHGEKARHA 201: ELLAAGGEEM REREGKESAG GVGGRSVKDT VAEKGQQAKE SVGEGAQKAG SATSEKAQRA SEYATEKGKE AGNMTAEQAA RAKDYALQKA VEAKETAAEK 301: AQRASEYMKE TGSTAAEQAA RAKDYTLQKA VEAKDVAAEK AQRASEYMTE TGKQAGNVAA QKGQEAASMT AKAKDYTVQK AGEAAGYIKE TTVEGGKGAA 401: HYAGVAAEKA AAVGWTAAHF TTEKVVQGTK AVAGTVEGAV GYAGHKAVEV GSKAVDLTKE KAAVAADTVV GYTARKKEEA QHRDQEMHQG GEEEKQPGFV 501: SGARRDFGEE YGEERGSEKD VYGYGAKGIP GEGRGDVGEA EYGRGSEKDV FGYGPKGTVE EARRDVGEEY GGGRGSERYV EEEGVGAGGV LGAIGETIAE 601: IAQTTKNIVI GDAPVRTHEH GTTDPDYMRR EHGQR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)