AT4G09600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GAST1 protein homolog 3 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
GAST1 protein homolog 3 (GASA3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: fruit, seed, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: GAST1 protein homolog 2 (TAIR:AT4G09610.1); Has 469 Blast hits to 469 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 469; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:6073014..6073516 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 10705.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.50 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.15 | ||||||||||||||||||||||||||||||||||||||||
| Length | 99 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
1: MAIFRSTLVL LLILFCLTTF ELHVHAAEDS QVGEGVVKID CGGRCKGRCS KSSRPNLCLR ACNSCCYRCN CVPPGTAGNH HLCPCYASIT TRGGRLKCP | ||||||||||||||||||||||||||||||||||||||||
| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)