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AT1G26560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28003327 (2017): extracellular region apoplast
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : beta glucosidase 40
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
beta glucosidase 40 (BGLU40); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: apoplast, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 41 (TAIR:AT5G54570.1); Has 11482 Blast hits to 11079 proteins in 1478 species: Archae - 142; Bacteria - 7937; Metazoa - 716; Fungi - 201; Plants - 1474; Viruses - 0; Other Eukaryotes - 1012 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G26560-MONOMERCAZy:GH1EC:3.2.1.21eggNOG:COG2723
eggNOG:KOG0626EMBL:AC013427EMBL:AK221011EMBL:AY045927
EMBL:AY085043EMBL:AY142610EMBL:CP002684EnsemblPlants:AT1G26560
EnsemblPlants:AT1G26560.1entrez:839196Gene3D:3.20.20.80GeneID:839196
Genevisible:Q9FZE0GO:GO:0005975GO:GO:0008422GO:GO:0009507
GO:GO:0048046Gramene:AT1G26560.1hmmpanther:PTHR10353hmmpanther:PTHR10353:SF26
HOGENOM:HOG000088630InParanoid:Q9FZE0InterPro:IPR001360InterPro:IPR013781
InterPro:IPR017853InterPro:IPR033132KEGG:ath:AT1G26560KO:K01188
OMA:CICADISPANTHER:PTHR10353PaxDb:Q9FZE0Pfam:PF00232
Pfam:Q9FZE0PhylomeDB:Q9FZE0PIR:F86392PRIDE:Q9FZE0
PRINTS:PR00131PRO:PR:Q9FZE0PROSITE:PS00653ProteinModelPortal:Q9FZE0
Proteomes:UP000006548RefSeq:NP_173978.1scanprosite:PS00653SMR:Q9FZE0
STRING:3702.AT1G26560.1SUPFAM:SSF51445TAIR:AT1G26560tair10-symbols:BGLU40
UniGene:At.15959UniProt:Q9FZE0
Coordinates (TAIR10) chr1:+:9178513..9181726
Molecular Weight (calculated) 58128.40 Da
IEP (calculated) 8.14
GRAVY (calculated) -0.28
Length 510 amino acids
Sequence (TAIR10)
(BLAST)
001: MAHRRLIMTM TKMMMMVTMM MMMDKTCICA DISRGSFPKG FVFGTASSAF QHEGAVKAEG RGPTIWDTFS HTFGKITDFS NADVAVDQYH RYEEDVQLMK
101: NMGMDAYRFS ISWTRIFPNG VGHINEAGID HYNKLINALL AKGIEPYVTL YHWDLPQALH DRYLGWLNPQ IINDFAAYAE VCFQRFGDRV KHWITFNEPH
201: TFAIQGYDVG LQAPGRCTIL FKLTCREGNS STEPYIVGHN VILTHATVSD IYRKKYKAKQ GGSLGIAFDV MWFEPESNKT EDIEAAQRAQ DFQLGWFLDP
301: LMFGDYPSSM RSRVGSRLPV FTGSQSSLVK GSLDFVGINH YTTYYARNNA TNLIGTLLHD AVSDSGTVTL PFKGLSTIGD RASSIWLYIV PRGMRSLMNY
401: IKHRYGNPPV FITENGMDDP NSILISRKDA LKDAKRIKYH HDYLSSLQAS IKEDGCNVKG YFVWSLLDNW EWAAGYSSRF GLYFVDYRDN LKRYPKDSVH
501: WFTSFLNSTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)