suba logo
AT1G10370.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.954
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22215637 (2012): plasma membrane
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glutathione S-transferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EARLY-RESPONSIVE TO DEHYDRATION 9 (ERD9); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to water deprivation, response to karrikin, toxin catabolic process; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase TAU 18 (TAIR:AT1G10360.1); Has 6064 Blast hits to 6029 proteins in 1096 species: Archae - 0; Bacteria - 2896; Metazoa - 397; Fungi - 130; Plants - 2065; Viruses - 0; Other Eukaryotes - 576 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G10370-MONOMERBRENDA:2.5.1.18EC:2.5.1.18eggNOG:ENOG410XSIX
eggNOG:KOG0406EMBL:AB039930EMBL:AC005489EMBL:AF288191
EMBL:BT023743EMBL:CP002684EnsemblPlants:AT1G10370EnsemblPlants:AT1G10370.1
entrez:837576Gene3D:1.20.1050.10Gene3D:3.40.30.10GeneID:837576
Genevisible:Q9FUS8GO:GO:0004364GO:GO:0005737GO:GO:0005829
GO:GO:0006749GO:GO:0009407GO:GO:0009507GO:GO:0009636
GO:GO:0009651GO:GO:0009704GO:GO:0040008GO:GO:0048527
GO:GO:0060416GO:GO:0080148GO:GO:0080167Gramene:AT1G10370.1
hmmpanther:PTHR11260hmmpanther:PTHR11260:SF312HOGENOM:HOG000125749InParanoid:Q9FUS8
InterPro:IPR004045InterPro:IPR004046InterPro:IPR010987InterPro:IPR012336
KEGG:ath:AT1G10370KO:K00799OMA:AFIDCSKPaxDb:Q9FUS8
Pfam:PF00043Pfam:PF02798Pfam:PF13417Pfam:Q9FUS8
Pfscan:PS50404Pfscan:PS50405PhylomeDB:Q9FUS8PRIDE:Q9FUS8
PRO:PR:Q9FUS8PROSITE:PS50404PROSITE:PS50405ProteinModelPortal:Q9FUS8
Proteomes:UP000006548RefSeq:NP_172508.4SMR:Q9FUS8STRING:3702.AT1G10370.1
SUPFAM:SSF47616SUPFAM:SSF52833TAIR:AT1G10370tair10-symbols:ATGSTU17
tair10-symbols:ERD9tair10-symbols:GST30tair10-symbols:GST30BUniGene:At.11290
UniProt:Q9FUS8
Coordinates (TAIR10) chr1:-:3397274..3398273
Molecular Weight (calculated) 25308.50 Da
IEP (calculated) 6.54
GRAVY (calculated) -0.09
Length 227 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSDVKLIG AWASPFVMRP RIALNLKSVP YEFLQETFGS KSELLLKSNP VHKKIPVLLH ADKPVSESNI IVEYIDDTWS SSGPSILPSD PYDRAMARFW
101: AAYIDEKWFV ALRGFLKAGG EEEKKAVIAQ LEEGNAFLEK AFIDCSKGKP FFNGDNIGYL DIALGCFLAW LRVTELAVSY KILDEAKTPS LSKWAENFCN
201: DPAVKPVMPE TAKLAEFAKK IFPKPQA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)