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AT2G37040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 0.613
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : PHE ammonia lyase 1
Curator
Summary (TAIR10)
Encodes PAL1, a phenylalanine ammonia-lyase. Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4).
Computational
Description (TAIR10)
PHE ammonia lyase 1 (PAL1); FUNCTIONS IN: phenylalanine ammonia-lyase activity; INVOLVED IN: in 10 processes; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanine/histidine ammonia-lyase (InterPro:IPR001106), Phenylalanine/histidine ammonia-lyases, active site (InterPro:IPR022313), L-Aspartase-like (InterPro:IPR008948), Phenylalanine ammonia-lyase (InterPro:IPR005922); BEST Arabidopsis thaliana protein match is: phenylalanine ammonia-lyase 2 (TAIR:AT3G53260.1); Has 4888 Blast hits to 4867 proteins in 1414 species: Archae - 40; Bacteria - 2973; Metazoa - 79; Fungi - 127; Plants - 1176; Viruses - 0; Other Eukaryotes - 493 (source: NCBI BLink).
Protein Annotations
BioGrid:3624BRENDA:4.3.1.24EC:4.3.1.24eggNOG:COG2986
eggNOG:KOG0222EMBL:AC006922EMBL:AY045919EMBL:AY079363
EMBL:AY303128EMBL:BT003330EMBL:CP002685EMBL:L33677
EMBL:X62747EnsemblPlants:AT2G37040EnsemblPlants:AT2G37040.1entrez:818280
Gene3D:1.10.274.20Gene3D:1.10.275.10GeneID:818280Genevisible:P35510
GO:GO:0005737GO:GO:0006559GO:GO:0006979GO:GO:0009555
GO:GO:0009800GO:GO:0009819GO:GO:0010224GO:GO:0045548
GO:GO:0046244GO:GO:0046274GO:GO:0080167Gramene:AT2G37040.1
gramene_pathway:4.3.1.24gramene_pathway:PWY-1121gramene_pathway:PWY-6444gramene_pathway:PWY-6457
gramene_pathway:PWY1F-467gramene_plant_reactome:1119582gramene_plant_reactome:6875580HOGENOM:HOG000214384
InParanoid:P35510IntAct:P35510InterPro:IPR001106InterPro:IPR005922
InterPro:IPR008948InterPro:IPR022313InterPro:IPR023144InterPro:IPR024083
KEGG:00360+4.3.1.24KEGG:00940+4.3.1.24KEGG:ath:AT2G37040KO:K10775
OMA:RINECRSPaxDb:P35510Pfam:P35510Pfam:PF00221
PhylomeDB:P35510PIR:G84787PIR:S52990PRIDE:P35510
PRO:PR:P35510PROSITE:PS00488ProteinModelPortal:P35510Proteomes:UP000006548
Reactome:R-ATH-70921RefSeq:NP_181241.1SABIO-RK:P35510scanprosite:PS00488
SMR:P35510STRING:3702.AT2G37040.1SUPFAM:SSF48557TAIR:AT2G37040
tair10-symbols:ATPAL1tair10-symbols:PAL1TIGRfam:TIGR01226TIGRFAMs:TIGR01226
UniGene:At.21614UniGene:At.22705UniPathway:UPA00713UniProt:P35510
Coordinates (TAIR10) chr2:-:15557602..15560237
Molecular Weight (calculated) 78730.30 Da
IEP (calculated) 6.25
GRAVY (calculated) -0.16
Length 725 amino acids
Sequence (TAIR10)
(BLAST)
001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)