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AT1G06550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ATP-dependent caseinolytic (Clp) protease/crotonase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: 3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity; INVOLVED IN: response to karrikin, fatty acid beta-oxidation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: beta-hydroxyisobutyryl-CoA hydrolase 1 (TAIR:AT5G65940.1); Has 26566 Blast hits to 26556 proteins in 2155 species: Archae - 406; Bacteria - 18031; Metazoa - 1157; Fungi - 686; Plants - 463; Viruses - 0; Other Eukaryotes - 5823 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G06550-MONOMEREC:3.1.2.-eggNOG:COG1024eggNOG:ENOG410IK8T
EMBL:AC007592EMBL:AK221578EMBL:BT022051EMBL:BT026035
EMBL:CP002684EnsemblPlants:AT1G06550EnsemblPlants:AT1G06550.1entrez:837166
Gene3D:3.90.226.10GeneID:837166Genevisible:Q9SHJ8GO:GO:0016787
GO:GO:0016836GO:GO:0080167Gramene:AT1G06550.1gramene_pathway:3.1.2.4
gramene_pathway:PWY-3941gramene_pathway:VALDEG-PWYgramene_plant_reactome:1119445gramene_plant_reactome:6875560
hmmpanther:PTHR11941hmmpanther:PTHR11941:SF94HOGENOM:HOG000217005InParanoid:Q9SHJ8
InterPro:IPR029045InterPro:IPR032259iPTMnet:Q9SHJ8KEGG:ath:AT1G06550
KO:K05605OMA:DNAPKWDPaxDb:Q9SHJ8Pfam:PF16113
Pfam:Q9SHJ8PhylomeDB:Q9SHJ8PRIDE:Q9SHJ8PRO:PR:Q9SHJ8
ProteinModelPortal:Q9SHJ8Proteomes:UP000006548Reactome:R-ATH-70895RefSeq:NP_172142.2
SMR:Q9SHJ8STRING:3702.AT1G06550.1SUPFAM:SSF52096TAIR:AT1G06550
UniGene:At.16422UniProt:Q9SHJ8
Coordinates (TAIR10) chr1:-:2003834..2006564
Molecular Weight (calculated) 43259.70 Da
IEP (calculated) 5.23
GRAVY (calculated) -0.31
Length 387 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQEGQNIDE PVVIGEEKGS VRLTTLNRPR QLNVISPEVV FKLAEYLELW EKDDQTKLIL IKGTGRAFSA GGDLKVFYHG QESKDSCLEV VYRMYWLCYH
101: IHTYKKTQVS LVNGISMGGG AALMVPMKFS VVTEKTVFAT PEASFGFHTD CGFSYIHSRL PGHLGEFLAL TGARLNGKEL VAIGMATHFV PSGKLMDLEA
201: RLVSLDSGDA DVVQSTIEEF SEKVNLDKDS ILNKQSVINE CFSKESVKQI IQAFEAEASK DGNEWITPVI KGLKRSSPTG LKIVLQSIRE GRKQTLSDCL
301: KKEFRLTLNI LRKTISPDMY EGIRALTIDK DNSPKWNPAT LDEVDDEKIN SVFKLFEDDD IELQIPETEE NRWGGKYETS GYASVRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)