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AT1G48850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 1144 (EMB1144); FUNCTIONS IN: chorismate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process, embryo development ending in seed dormancy; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chorismate synthase, conserved site (InterPro:IPR020541), Chorismate synthase (InterPro:IPR000453); BEST Arabidopsis thaliana protein match is: RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (TAIR:AT1G48860.1); Has 9240 Blast hits to 9209 proteins in 2569 species: Archae - 213; Bacteria - 5247; Metazoa - 6; Fungi - 152; Plants - 112; Viruses - 0; Other Eukaryotes - 3510 (source: NCBI BLink).
Protein Annotations
EC:4.2.3.5eggNOG:COG0082eggNOG:KOG4492EMBL:AK227099
EnsemblPlants:AT1G48850EnsemblPlants:AT1G48850.1entrez:841307ExpressionAtlas:Q0WUP7
Gene3D:3.60.150.10GeneID:841307GO:GO:0004107GO:GO:0009073
GO:GO:0009423Gramene:AT1G48850.1gramene_pathway:4.2.3.5gramene_pathway:ARO-PWY-ARA
gramene_plant_reactome:1119430gramene_plant_reactome:6876010HAMAP:MF_00300hmmpanther:PTHR21085
hmmpanther:PTHR21085:SF0InterPro:IPR000453InterPro:IPR020541KEGG:00400+4.2.3.5
OMA:CIVQRAVPANTHER:PTHR21085PaxDb:Q0WUP7Pfam:P57720
Pfam:PF01264PhylomeDB:Q0WUP7PRIDE:Q0WUP7PROSITE:PS00787
PROSITE:PS00788PROSITE:PS00789ProteinModelPortal:Q0WUP7RefSeq:NP_564534.1
scanprosite:PS00787scanprosite:PS00788scanprosite:PS00789SMR:Q0WUP7
STRING:3702.AT1G48850.1SUPFAM:SSF103263TAIR:AT1G48850tair10-symbols:EMB1144
TIGRfam:TIGR00033TIGRFAMs:TIGR00033UniGene:At.43673UniGene:At.48292
UniPathway:UPA00053UniProt:P57720UniProt:Q0WUP7
Coordinates (TAIR10) chr1:-:18065154..18067956
Molecular Weight (calculated) 47320.50 Da
IEP (calculated) 8.22
GRAVY (calculated) -0.31
Length 436 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSLTSKS ILGSTKLGSS SLPSELRRLS SPAVQISLRT QTRKNFQIQA TGSSYGTHFR VSTFGESHGG GVGCIIDGCP PRIPLTESDL QFDLDRRRPG
101: QSRITTPRKE TDTCRISSGV SEGMTTGTPI HVFVPNTDQR GLDYSEMSVA YRPSHADATY DMKYGVRSVQ GGGRSSARET IGRVAPGALA KKILKQFAGT
201: EILAYVSQVH HVVLPEELVD HENLTLEQIE NNIVRCPNPE YAEKMIAAID AVRTKGNSVG GVVTCIVRNA PRGLGTPVFD KLEAELAKAC MSLPATKGFE
301: FGSGFAGTFL TGLEHNDEFY TDENGRIRTR TNRSGGIQGG ISNGEIINMR VAFKPTSTIG RKQNTVTRDK VETEMIARGR HDPCVVPRAV PMVEAMVALV
401: LVDQLMAQYA QCHLFPINPE LQEPLQIEQP QNATAL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)