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AT3G06350.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MATERNAL EFFECT EMBRYO ARREST 32 (MEE32); FUNCTIONS IN: NADP or NADPH binding, 3-dehydroquinate dehydratase activity, shikimate 5-dehydrogenase activity, binding, catalytic activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase (InterPro:IPR006151), Aldolase-type TIM barrel (InterPro:IPR013785), Quinate/shikimate 5-dehydrogenase (InterPro:IPR011342), NAD(P)-binding domain (InterPro:IPR016040), Dehydroquinase class I (InterPro:IPR001381), Shikimate dehydrogenase substrate binding, N-terminal (InterPro:IPR013708); Has 14455 Blast hits to 14453 proteins in 2669 species: Archae - 507; Bacteria - 10604; Metazoa - 0; Fungi - 391; Plants - 114; Viruses - 0; Other Eukaryotes - 2839 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G06350-MONOMERBioCyc:MetaCyc:AT3G06350-MONOMERBRENDA:4.2.1.10EC:1.1.1.25
EC:4.2.1.10eggNOG:COG0169eggNOG:COG0710eggNOG:KOG0692
EMBL:AC011623EMBL:AK220988EMBL:AY736474EMBL:BT012197
EMBL:CP002686EnsemblPlants:AT3G06350EnsemblPlants:AT3G06350.1entrez:819809
EvolutionaryTrace:Q9SQT8Gene3D:3.20.20.70Gene3D:3.40.50.720GeneID:819809
Genevisible:Q9SQT8GO:GO:0003855GO:GO:0004764GO:GO:0009073
GO:GO:0009423GO:GO:0009507GO:GO:0009570GO:GO:0009793
GO:GO:0019632GO:GO:0050661Gramene:AT3G06350.1gramene_pathway:1.1.1.25
gramene_pathway:4.2.1.10gramene_pathway:ARO-PWY-ARAgramene_plant_reactome:1119430gramene_plant_reactome:6874486
gramene_plant_reactome:6876506HAMAP:MF_00214HAMAP:MF_00222hmmpanther:PTHR21089
hmmpanther:PTHR21089:SF1HOGENOM:HOG000237875InParanoid:Q9SQT8InterPro:IPR001381
InterPro:IPR006151InterPro:IPR011342InterPro:IPR013708InterPro:IPR013785
InterPro:IPR016040InterPro:IPR022893iPTMnet:Q9SQT8KEGG:00400+1.1.1.25
KEGG:00400+4.2.1.10KEGG:ath:AT3G06350KO:K13832OMA:GYEMFIE
PaxDb:Q9SQT8PDB:2GPTPDB:2O7QPDB:2O7S
PDBsum:2GPTPDBsum:2O7QPDBsum:2O7SPfam:PF01487
Pfam:PF01488Pfam:PF08501Pfam:Q9SQT8PhylomeDB:Q9SQT8
PRIDE:Q9SQT8PRO:PR:Q9SQT8ProteinModelPortal:Q9SQT8Proteomes:UP000006548
RefSeq:NP_187286.1SABIO-RK:Q9SQT8SMR:Q9SQT8STRING:3702.AT3G06350.1
SUPFAM:SSF51569SUPFAM:SSF51735SUPFAM:SSF53223TAIR:AT3G06350
tair10-symbols:EMB3004tair10-symbols:MEE32TIGRfam:TIGR00507TIGRfam:TIGR01093
TIGRFAMs:TIGR00507TIGRFAMs:TIGR01093UniGene:At.43031UniPathway:UPA00053
UniProt:Q9SQT8
Coordinates (TAIR10) chr3:-:1924536..1927701
Molecular Weight (calculated) 65799.70 Da
IEP (calculated) 6.85
GRAVY (calculated) -0.16
Length 603 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASSTNARL TNPPRLLSKP RLSPTSVANL RFPAADFSTR FFADSSSPRL RSVPFPVVFS DQRRRRSMEP SNVYVASNST EMEIGSHDIV KNPSLICAPV
101: MADSIDKMVI ETSKAHELGA DLVEIRLDWL KDFNPLEDLK TIIKKSPLPT LFTYRPKWEG GQYEGDENER RDVLRLAMEL GADYIDVELQ VASEFIKSID
201: GKKPGKFKVI VSSHNYQNTP SVEDLDGLVA RIQQTGADIV KIATTAVDIA DVARMFHITS KAQVPTIGLV MGERGLMSRI LCSKFGGYLT FGTLDSSKVS
301: APGQPTIKDL LDLYNFRRIG PDTKVYGIIG KPVSHSKSPI VHNQAFKSVD FNGVYVHLLV DNLVSFLQAY SSSDFAGFSC TIPHKEAALQ CCDEVDPLAK
401: SIGAVNTILR RKSDGKLLGY NTDCIGSISA IEDGLRSSGD PSSVPSSSSP LASKTVVVIG AGGAGKALAY GAKEKGAKVV IANRTYERAL ELAEAIGGKA
501: LSLTDLDNYH PEDGMVLANT TSMGMQPNVE ETPISKDALK HYALVFDAVY TPRITRLLRE AEESGAITVS GSEMFVRQAY EQFEIFTGLP APKELYWQIM
601: SKY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)