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AT5G48930.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase
Curator
Summary (TAIR10)
At5g48930 has been shown to encode for the hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase (HCT) both synthesizing and catabolizing the hydroxycinnamoylesters (coumaroyl/caffeoyl shikimate and quinate) involved in the phenylpropanoid pathway. Influence on the accumulation of flavonoids which in turn inhibit auxin transport and reduce plant growth.
Computational
Description (TAIR10)
hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (HCT); CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G57840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G48930-MONOMERBioGrid:20197DNASU:834951EC:2.3.1.133
eggNOG:ENOG410IF23eggNOG:ENOG410XPQ7EMBL:AB017061EMBL:AK226213
EMBL:AY084652EMBL:BT026488EMBL:CP002688EnsemblPlants:AT5G48930
EnsemblPlants:AT5G48930.1entrez:834951Gene3D:3.30.559.10GeneID:834951
Genevisible:Q9FI78GO:GO:0005737GO:GO:0005829GO:GO:0009809
GO:GO:0009963GO:GO:0010252GO:GO:0016020GO:GO:0047172
GO:GO:0047205Gramene:AT5G48930.1gramene_pathway:2.3.1.133gramene_pathway:3.1.2.-
gramene_pathway:PWY-361gramene_pathway:PWY-5868gramene_plant_reactome:1119316gramene_plant_reactome:6873645
gramene_plant_reactome:6874363gramene_plant_reactome:6875657gramene_plant_reactome:6876133hmmpanther:PTHR31642
hmmpanther:PTHR31642:SF11HOGENOM:HOG000237412InParanoid:Q9FI78IntAct:Q9FI78
InterPro:IPR003480InterPro:IPR023213KEGG:ath:AT5G48930KO:K13065
OMA:RMDDNYLPaxDb:Q9FI78Pfam:PF02458Pfam:Q9FI78
PhylomeDB:Q9FI78PRIDE:Q9FI78PRO:PR:Q9FI78ProteinModelPortal:Q9FI78
Proteomes:UP000006548RefSeq:NP_199704.1SMR:Q9FI78STRING:3702.AT5G48930.1
TAIR:AT5G48930tair10-symbols:HCTUniGene:At.24445UniProt:Q9FI78
Coordinates (TAIR10) chr5:-:19836654..19838092
Molecular Weight (calculated) 47977.60 Da
IEP (calculated) 6.65
GRAVY (calculated) -0.12
Length 433 amino acids
Sequence (TAIR10)
(BLAST)
001: MKINIRDSTM VRPATETPIT NLWNSNVDLV IPRFHTPSVY FYRPTGASNF FDPQVMKEAL SKALVPFYPM AGRLKRDDDG RIEIDCNGAG VLFVVADTPS
101: VIDDFGDFAP TLNLRQLIPE VDHSAGIHSF PLLVLQVTFF KCGGASLGVG MQHHAADGFS GLHFINTWSD MARGLDLTIP PFIDRTLLRA RDPPQPAFHH
201: VEYQPAPSMK IPLDPSKSGP ENTTVSIFKL TRDQLVALKA KSKEDGNTVS YSSYEMLAGH VWRSVGKARG LPNDQETKLY IATDGRSRLR PQLPPGYFGN
301: VIFTATPLAV AGDLLSKPTW YAAGQIHDFL VRMDDNYLRS ALDYLEMQPD LSALVRGAHT YKCPNLGITS WVRLPIYDAD FGWGRPIFMG PGGIPYEGLS
401: FVLPSPTNDG SLSVAIALQS EHMKLFEKFL FEI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)