AT1G49740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : PLC-like phosphodiesterases superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: intracellular signaling pathway, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterases superfamily protein (TAIR:AT3G19310.1); Has 451 Blast hits to 448 proteins in 104 species: Archae - 0; Bacteria - 81; Metazoa - 8; Fungi - 159; Plants - 152; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:18407728..18409468 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39827.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.20 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||
| Length | 359 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFQRLLLFLL IALLLQSSFL LEISSALKEG KTCITNSNCD AGLHCETCIA NTDFRPRCSR TQPINPITKA KGLPFNKYSW LTTHNSFARL GEVSRTGSAI 101: LAPTNQQDSI TSQLNNGVRG FMLDMYDFQN DIWLCHSFDG TCFNFTAFQP AINILREFQV FLEKNKEEVV TIIIEDYVKS PKGLTKVFDA AGLRKFMFPV 201: SRMPKNGGDW PRLDDMVRKN QRLLVFTSDS HKEATEGIAY QWKYMVENQY GNGGLKVGVC PNRAQSAPMS DKSKSLVLVN HFPDAADVIV ACKQNSASLL 301: ESIKTCYQAA GQRWPNFIAV DFYKRSDGGG APQAVDVANG NLICGCDNFA ACKADGKCG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)