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AT1G60710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-linked oxidoreductase superfamily protein
Curator
Summary (TAIR10)
Encodes ATB2.
Computational
Description (TAIR10)
ATB2; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase subgroup (InterPro:IPR020471); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT1G60730.1); Has 30719 Blast hits to 30695 proteins in 2595 species: Archae - 650; Bacteria - 20319; Metazoa - 1822; Fungi - 2308; Plants - 1286; Viruses - 0; Other Eukaryotes - 4334 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G60710-MONOMEREC:1.1.1.-eggNOG:COG0667eggNOG:KOG1575
EMBL:AC002292EMBL:AF057715EMBL:AJ608277EMBL:AY056440
EMBL:AY099655EMBL:BT000251EMBL:CP002684EMBL:Z26233
EnsemblPlants:AT1G60710EnsemblPlants:AT1G60710.1entrez:842365Gene3D:3.20.20.100
GeneID:842365Genevisible:Q93ZN2GO:GO:0005829GO:GO:0016491
GO:GO:0046686Gramene:AT1G60710.1hmmpanther:PTHR11732hmmpanther:PTHR11732:SF226
HOGENOM:HOG000250284InParanoid:Q93ZN2IntAct:Q93ZN2InterPro:IPR001395
InterPro:IPR020471InterPro:IPR023210KEGG:ath:AT1G60710ncoils:Coil
OMA:CAISEKKPANTHER:PTHR11732PaxDb:Q93ZN2Pfam:PF00248
Pfam:Q93ZN2PhylomeDB:Q93ZN2PIR:E96632PRIDE:Q93ZN2
PRINTS:PR00069PRO:PR:Q93ZN2ProteinModelPortal:Q93ZN2Proteomes:UP000006548
RefSeq:NP_564761.1SMR:Q93ZN2STRING:3702.AT1G60710.1SUPFAM:SSF51430
TAIR:AT1G60710tair10-symbols:ATB2UniGene:At.22690UniProt:Q93ZN2
Coordinates (TAIR10) chr1:-:22355073..22356627
Molecular Weight (calculated) 37926.70 Da
IEP (calculated) 6.25
GRAVY (calculated) -0.23
Length 345 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEACGVRRM KLGSQGLEVS AQGLGCMGLS AFYGAPKPEN EAIALIHHAI HSGVTLLDTS DIYGPETNEV LLGKALKDGV REKVELATKF GISYAEGKRE
101: VRGDPEYVRA ACEASLKRLD IACIDLYYQH RVDTRVPIEI TMGELKKLVE EGKIKYIGLS EASASTIRRA HAVHPITAVQ IEWSLWTRDV EEEIIPTCRE
201: LGIGIVAYSP LGRGFFASGP KLVENLEKDD FRKALPRFQE ENLDHNKIVY EKVCAISEKK GCTPGQLALA WVHHQGDDVC PIPGTTKIEN LKQNIGALSV
301: KLTPEEMTEL EAIAQPGFVK GDRYSNMIPT FKNAETPPLS AWKAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)