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AT1G13440.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:32219438 (2020): cytosol
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:30135097 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24727099 (2014): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24130194 (2013): peroxisome
  • PMID:24124904 (2013): plastid
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:20843791 (2010): plasma membrane
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15574830 (2004): plasma membrane
  • PMID:15496452 (2005): nucleus
  • PMID:15060130 (2004): plasma membrane
  • PMID:15028209 (2004): plastid
  • PMID:14671022 (2004): mitochondrion
  • PMID:14617066 (2003): nucleus
  • PMID:12492832 (2002): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : glyceraldehyde-3-phosphate dehydrogenase C2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)		 glyceraldehyde-3-phosphate dehydrogenase C2 (GAPC2); FUNCTIONS IN: copper ion binding, glyceraldehyde-3-phosphate dehydrogenase activity, zinc ion binding; INVOLVED IN: response to oxidative stress, response to cadmium ion, gluconeogenesis, defense response to bacterium, glycolysis; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (TAIR:AT3G04120.1); Has 25382 Blast hits to 25370 proteins in 6374 species: Archae - 87; Bacteria - 10988; Metazoa - 2357; Fungi - 2864; Plants - 3864; Viruses - 0; Other Eukaryotes - 5222 (source: NCBI BLink).
Protein Annotations
BioGrid:23144EC:1.2.1.12eggNOG:COG0057eggNOG:KOG0657
EMBL:AC011810EMBL:AF410271EMBL:AK317337EMBL:AY049259
EMBL:AY090275EMBL:CP002684EnsemblPlants:AT1G13440EnsemblPlants:AT1G13440.1
entrez:837904ExpressionAtlas:Q9FX54Gene3D:3.40.50.720GeneID:837904
Genevisible:Q9FX54GO:GO:0003677GO:GO:0004365GO:GO:0005507
GO:GO:0005618GO:GO:0005634GO:GO:0005730GO:GO:0005739
GO:GO:0005777GO:GO:0005829GO:GO:0005886GO:GO:0006094
GO:GO:0006096GO:GO:0006979GO:GO:0008270GO:GO:0009506
GO:GO:0009507GO:GO:0016020GO:GO:0042742GO:GO:0046686
GO:GO:0050661GO:GO:0051287gramene_pathway:1.2.1.12gramene_pathway:GLYCOLYSIS
gramene_pathway:PWY-1042gramene_pathway:PWYQT-4428gramene_plant_reactome:1119570gramene_plant_reactome:6874315
hmmpanther:PTHR10836hmmpanther:PTHR10836:SF53InParanoid:Q9FX54IntAct:Q9FX54
InterPro:IPR006424InterPro:IPR016040InterPro:IPR020828InterPro:IPR020829
InterPro:IPR020830InterPro:IPR020831iPTMnet:Q9FX54KEGG:00010+1.2.1.12
KEGG:00710+1.2.1.12OMA:WQHEASSPANTHER:PTHR10836PaxDb:Q9FX54
Pfam:PF00044Pfam:PF02800Pfam:Q9FX54PhylomeDB:Q9FX54
PIRSF:PIRSF000149PRIDE:Q9FX54PRINTS:PR00078PRO:PR:Q9FX54
PROSITE:PS00071ProteinModelPortal:Q9FX54Proteomes:UP000006548Reactome:R-ATH-70171
Reactome:R-ATH-70263RefSeq:NP_172801.1scanprosite:PS00071SMART:SM00846
SMR:Q9FX54STRING:3702.AT1G13440.1SUPFAM:SSF51735SUPFAM:SSF55347
TAIR:AT1G13440tair10-symbols:GAPC-2tair10-symbols:GAPC2TIGRfam:TIGR01534
TIGRFAMs:TIGR01534UniGene:At.23790UniGene:At.24406UniPathway:UPA00109
UniProt:Q9FX54World-2DPAGE:0003:Q9FX54
Coordinates (TAIR10) chr1:-:4608465..4610494
Molecular Weight (calculated) 36915.30 Da
IEP (calculated) 7.22
GRAVY (calculated) -0.14
Length 338 amino acids
Sequence (TAIR10)
(BLAST) 		001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH HELKVKDDKT LLFGEKPVTV FGIRNPEDIP WGEAGADFVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPSLNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKMKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)