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AT2G38530.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
extracellular 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : plasma membrane 16618929
TAIR : plasma membrane 16618929
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28289427 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22923678 (2012): Golgi
  • PMID:20061580 (2010): plastid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18998720 (2009): extracellular region
  • PMID:16729891 (2006): extracellular region
  • PMID:16618929 (2006): plasma membrane
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : lipid transfer protein 2
Curator
Summary (TAIR10)
Involved in lipid transfer between membranes. Belongs to a family of Lipid transfer proteins. Sequence similarity to other plant/Arabidopsis LPT genes but highest similarity to LPT1. Stress and pathogen-inducible motifs found in the upstream region. Expressed in flower, leaves and siliques but absent in roots. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.
Computational
Description (TAIR10)
lipid transfer protein 2 (LTP2); FUNCTIONS IN: lipid binding; INVOLVED IN: programmed cell death, phospholipid transfer to membrane; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: lipid transfer protein 1 (TAIR:AT2G38540.1); Has 1099 Blast hits to 1099 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1096; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
Allergome:1085BioGrid:3777eggNOG:ENOG410J51EeggNOG:ENOG410YX3Q
EMBL:AB238795EMBL:AC005499EMBL:AF057357EMBL:AF159799
EMBL:AY059927EMBL:AY081562EMBL:AY085800EMBL:CP002685
EMBL:Z17770EMBL:Z17787EMBL:Z18168EnsemblPlants:AT2G38530
EnsemblPlants:AT2G38530.1entrez:818435GeneID:818435Genevisible:Q9S7I3
GO:GO:0005768GO:GO:0005794GO:GO:0005802GO:GO:0005886
GO:GO:0006649GO:GO:0008289GO:GO:0009414Gramene:AT2G38530.1
hmmpanther:PTHR33076hmmpanther:PTHR33076:SF20HOGENOM:HOG000237659InParanoid:Q9S7I3
InterPro:IPR000528InterPro:IPR016140KEGG:ath:AT2G38530OMA:PGICKAN
PaxDb:Q9S7I3Pfam:PF00234Pfam:Q9S7I3Pfscan:PS51257
PhylomeDB:Q9S7I3PIR:B84806PRIDE:Q9S7I3PRINTS:PR00382
PRO:PR:Q9S7I3PROSITE:PS00597ProteinModelPortal:Q9S7I3Proteomes:UP000006548
RefSeq:NP_181387.1scanprosite:PS00597SMART:SM00499SMR:Q9S7I3
STRING:3702.AT2G38530.1SUPFAM:SSF47699TAIR:AT2G38530tair10-symbols:cdf3
tair10-symbols:LP2tair10-symbols:LTP2UniGene:At.10717UniGene:At.75558
UniProt:Q9S7I3
Coordinates (TAIR10) chr2:+:16128481..16128948
Molecular Weight (calculated) 11938.80 Da
IEP (calculated) 9.09
GRAVY (calculated) 0.35
Length 118 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGVMKLACM VLACMIVAGP ITANALMSCG TVNGNLAGCI AYLTRGAPLT QGCCNGVTNL KNMASTTPDR QQACRCLQSA AKAVGPGLNT ARAAGLPSAC
101: KVNIPYKISA STNCNTVR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)