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AT2G38540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:22923678 (2012): plasma membrane
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:19329564 (2009): peroxisome
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : lipid transfer protein 1
Curator
Summary (TAIR10)
Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.
Computational
Description (TAIR10)
lipid transfer protein 1 (LP1); FUNCTIONS IN: calmodulin binding; INVOLVED IN: lipid transport; LOCATED IN: apoplast, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: lipid transfer protein 2 (TAIR:AT2G38530.1); Has 1149 Blast hits to 1148 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1145; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
Allergome:1085BioGrid:3778eggNOG:ENOG410J51EeggNOG:ENOG410YX3Q
EMBL:AC005499EMBL:AF159798EMBL:AY049296EMBL:AY091677
EMBL:CP002685EMBL:M80567EnsemblPlants:AT2G38540EnsemblPlants:AT2G38540.1
entrez:818436GeneID:818436Genevisible:Q42589GO:GO:0005516
GO:GO:0005886GO:GO:0006869GO:GO:0008289GO:GO:0009505
GO:GO:0009534GO:GO:0048046GO:GO:0071555Gramene:AT2G38540.1
hmmpanther:PTHR33076hmmpanther:PTHR33076:SF20HOGENOM:HOG000237659InParanoid:Q42589
InterPro:IPR000528InterPro:IPR016140KEGG:ath:AT2G38540MINT:MINT-1339779
OMA:AGIPKACPaxDb:Q42589Pfam:PF00234Pfam:Q42589
Pfscan:PS51257PhylomeDB:Q42589PIR:C84806PRIDE:Q42589
PRINTS:PR00382PRO:PR:Q42589PROSITE:PS00597ProteinModelPortal:Q42589
Proteomes:UP000006548RefSeq:NP_181388.1scanprosite:PS00597SMART:SM00499
SMR:Q42589STRING:3702.AT2G38540.1SUPFAM:SSF47699TAIR:AT2G38540
tair10-symbols:ATLTP1tair10-symbols:LP1tair10-symbols:LTP1UniGene:At.25225
UniProt:Q42589
Coordinates (TAIR10) chr2:+:16130418..16130893
Molecular Weight (calculated) 11755.60 Da
IEP (calculated) 9.09
GRAVY (calculated) 0.47
Length 118 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGVMKLACL LLACMIVAGP ITSNAALSCG SVNSNLAACI GYVLQGGVIP PACCSGVKNL NSIAKTTPDR QQACNCIQGA ARALGSGLNA GRAAGIPKAC
101: GVNIPYKIST STNCKTVR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)