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AT5G22500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22923678 (2012): plasma membrane
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : fatty acid reductase 1
Curator
Summary (TAIR10)
Encodes a member of the eight-member gene family encoding alcohol-forming fatty acyl-CoA reductases (FARs) identified in Arabidopsis thaliana. Three of the FARs, FAR1 (At5g22500), FAR4 (At3g44540) and FAR5 (At3g44550), are shown to generate the fatty alcohols found in root, seed coat, and wound-induced leaf tissue.
Computational
Description (TAIR10)
fatty acid reductase 1 (FAR1); FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors, fatty-acyl-CoA reductase (alcohol-forming) activity, long-chain-fatty-acyl-CoA reductase activity; INVOLVED IN: response to salt stress, microsporogenesis, response to wounding, suberin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Male sterility (InterPro:IPR004262), NAD(P)-binding domain (InterPro:IPR016040), Male sterility, NAD-binding (InterPro:IPR013120); BEST Arabidopsis thaliana protein match is: fatty acid reductase 4 (TAIR:AT3G44540.1); Has 2592 Blast hits to 2555 proteins in 497 species: Archae - 6; Bacteria - 759; Metazoa - 1002; Fungi - 307; Plants - 285; Viruses - 0; Other Eukaryotes - 233 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G22500-MONOMERBRENDA:1.2.1.42BRENDA:1.2.1.50BRENDA:1.2.1.84
BRENDA:1.2.1.B25EC:1.2.1.n2eggNOG:ENOG410XS7ReggNOG:KOG1221
EMBL:AB012244EMBL:AY035042EMBL:AY051075EMBL:CP002688
EMBL:EU280149EMBL:X99923EnsemblPlants:AT5G22500EnsemblPlants:AT5G22500.1
entrez:832311Gene3D:3.40.50.720GeneID:832311Genevisible:Q39152
GO:GO:0005886GO:GO:0006629GO:GO:0009507GO:GO:0009611
GO:GO:0009651GO:GO:0010345GO:GO:0050062GO:GO:0080019
Gramene:AT5G22500.1gramene_pathway:1.2.1.-gramene_pathway:PWY-282hmmpanther:PTHR11011
hmmpanther:PTHR11011:SF25HOGENOM:HOG000242967InterPro:IPR013120InterPro:IPR016040
InterPro:IPR026055KEGG:ath:AT5G22500KO:K13356OMA:DIMYENF
PANTHER:PTHR11011PaxDb:Q39152Pfam:PF03015Pfam:PF07993
Pfam:Q39152PhylomeDB:Q39152PRIDE:Q39152PRO:PR:Q39152
ProteinModelPortal:Q39152Proteomes:UP000006548Reactome:R-ATH-75896RefSeq:NP_197642.1
SMR:Q39152STRING:3702.AT5G22500.1SUPFAM:SSF51735TAIR:AT5G22500
tair10-symbols:FAR1UniGene:At.21452UniProt:Q39152
Coordinates (TAIR10) chr5:+:7470541..7473916
Molecular Weight (calculated) 55484.10 Da
IEP (calculated) 8.42
GRAVY (calculated) -0.07
Length 491 amino acids
Sequence (TAIR10)
(BLAST)
001: MESNCVQFLG NKTILITGAP GFLAKVLVEK ILRLQPNVKK IYLLLRAPDE KSAMQRLRSE VMEIDLFKVL RNNLGEDNLN ALMREKIVPV PGDISIDNLG
101: LKDTDLIQRM WSEIDIIINI AATTNFDERY DIGLGINTFG ALNVLNFAKK CVKGQLLLHV STAYISGEQP GLLLEKPFKM GETLSGDREL DINIEHDLMK
201: QKLKELQDCS DEEISQTMKD FGMARAKLHG WPNTYVFTKA MGEMLMGKYR ENLPLVIIRP TMITSTIAEP FPGWIEGLKT LDSVIVAYGK GRLKCFLADS
301: NSVFDLIPAD MVVNAMVAAA TAHSGDTGIQ AIYHVGSSCK NPVTFGQLHD FTARYFAKRP LIGRNGSPII VVKGTILSTM AQFSLYMTLR YKLPLQILRL
401: INIVYPWSHG DNYSDLSRKI KLAMRLVELY QPYLLFKGIF DDLNTERLRM KRKENIKELD GSFEFDPKSI DWDNYITNTH IPGLITHVLK Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)