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AT5G02540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.717
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G37540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1028eggNOG:KOG1208EMBL:CP002688EnsemblPlants:AT5G02540
EnsemblPlants:AT5G02540.1entrez:831913Gene3D:3.40.50.720GeneID:831913
GO:GO:0016491Gramene:AT5G02540.1hmmpanther:PTHR24320hmmpanther:PTHR24320:SF81
InParanoid:F4KCF2InterPro:IPR002347InterPro:IPR016040KEGG:ath:AT5G02540
OMA:QFDTLNDPaxDb:F4KCF2Pfam:PF00106PRIDE:F4KCF2
PRINTS:PR00080PRINTS:PR00081ProteinModelPortal:F4KCF2Proteomes:UP000006548
Reactome:R-ATH-2453902Reactome:R-ATH-5365859RefSeq:NP_568102.1SMR:F4KCF2
STRING:3702.AT5G02540.1SUPFAM:SSF51735TAIR:AT5G02540UniGene:At.4944
UniGene:At.67113UniProt:F4KCF2
Coordinates (TAIR10) chr5:+:568609..570720
Molecular Weight (calculated) 36193.50 Da
IEP (calculated) 8.58
GRAVY (calculated) -0.03
Length 331 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLYSLITGR RGPSGFGSAS TAEEVTQGID ATNLTAIITG GTGGIGMETA RVLSKRGAHV VIGARNMGAA ENAKTEILRQ NANARVTLLQ LDLSSIKSIK
101: AFVREFHALH LPLNLLINNA GVMFCPYQLS EDGIELQFAT NHIGHFLLTN LLLDTMKNTA KTSGVEGRIL NVSSVAHIYT YQEGIQFDSI NDICSYSDKR
201: AYGQSKLANI LHANELSRQL QEEGVNITAN SVHPGLILTN LFQHTALLMR FLKFFSFYLW KNIPQGAATT CYVALHPSVK GVTGKYFADC NEVTPSKLAR
301: DETLAQKLWD FSVKLINSVS KKNYLGFDDT T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)