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AT1G06080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23175755 (2013): endoplasmic reticulum endoplasmic reticulum membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : delta 9 desaturase 1
Curator
Summary (TAIR10)
homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression down-regulated by cold temperature.
Computational
Description (TAIR10)
delta 9 desaturase 1 (ADS1); FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water; INVOLVED IN: oxidation reduction, lipid metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: 16:0delta9 desaturase 2 (TAIR:AT2G31360.1); Has 3455 Blast hits to 3455 proteins in 832 species: Archae - 0; Bacteria - 1551; Metazoa - 796; Fungi - 234; Plants - 106; Viruses - 4; Other Eukaryotes - 764 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G06080-MONOMEREC:1.14.19.-eggNOG:COG1398eggNOG:KOG1600
EMBL:AC024174EMBL:AF332433EMBL:AK119146EMBL:CP002684
EMBL:D88536EnsemblPlants:AT1G06080EnsemblPlants:AT1G06080.1entrez:837117
GeneID:837117Genevisible:O65797GO:GO:0005789GO:GO:0006636
GO:GO:0016021GO:GO:0016717GO:GO:0042761Gramene:AT1G06080.1
gramene_pathway:1.14.99.-gramene_pathway:PWY-782hmmpanther:PTHR11351hmmpanther:PTHR11351:SF2
HOGENOM:HOG000270353InParanoid:O65797InterPro:IPR005804InterPro:IPR015876
KEGG:ath:AT1G06080KO:K00507OMA:GWILSRRPaxDb:O65797
Pfam:O65797Pfam:PF00487PhylomeDB:O65797PIR:T52111
PRIDE:O65797PRINTS:PR00075PRO:PR:O65797ProteinModelPortal:O65797
Proteomes:UP000006548Reactome:R-ATH-75105RefSeq:NP_172098.1SMR:O65797
STRING:3702.AT1G06080.1TAIR:AT1G06080tair10-symbols:ADS1TMHMM:TMhelix
UniGene:At.342UniPathway:UPA00658UniProt:O65797
Coordinates (TAIR10) chr1:+:1843661..1846093
Molecular Weight (calculated) 36108.40 Da
IEP (calculated) 9.67
GRAVY (calculated) -0.20
Length 305 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLSASEKEE NNKKMAADKA EMGRKKRAMW ERKWKRLDIV KAFASLFVHF LCLLAPFNFT WPALRVALIV YTVGGLGITV SYHRNLAHRS FKVPKWLEYF
101: FAYCGLLAIQ GDPIDWVSTH RYHHQFTDSD RDPHSPNEGF WFSHLLWLFD TGYLVEKCGR RTNVEDLKRQ WYYKFLQRTV LYHILTFGFL LYYFGGLSFL
201: TWGMGIGVAM EHHVTCLINS LCHVWGSRTW KTNDTSRNVW WLSVFSFGES WHNNHHAFES SARQGLEWWQ IDISWYIVRF LEIIGLATDV KLPSESQRRR
301: MAMVR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)