AT1G06080.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:endoplasmic reticulum 0.999 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : delta 9 desaturase 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression down-regulated by cold temperature. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
delta 9 desaturase 1 (ADS1); FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water; INVOLVED IN: oxidation reduction, lipid metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: 16:0delta9 desaturase 2 (TAIR:AT2G31360.1); Has 3455 Blast hits to 3455 proteins in 832 species: Archae - 0; Bacteria - 1551; Metazoa - 796; Fungi - 234; Plants - 106; Viruses - 4; Other Eukaryotes - 764 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr1:+:1843661..1846093 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 36108.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.67 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 305 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSLSASEKEE NNKKMAADKA EMGRKKRAMW ERKWKRLDIV KAFASLFVHF LCLLAPFNFT WPALRVALIV YTVGGLGITV SYHRNLAHRS FKVPKWLEYF 101: FAYCGLLAIQ GDPIDWVSTH RYHHQFTDSD RDPHSPNEGF WFSHLLWLFD TGYLVEKCGR RTNVEDLKRQ WYYKFLQRTV LYHILTFGFL LYYFGGLSFL 201: TWGMGIGVAM EHHVTCLINS LCHVWGSRTW KTNDTSRNVW WLSVFSFGES WHNNHHAFES SARQGLEWWQ IDISWYIVRF LEIIGLATDV KLPSESQRRR 301: MAMVR |
||||||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)