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AT4G28720.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.901
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Flavin-binding monooxygenase family protein
Curator
Summary (TAIR10)
Auxin biosynthetic gene regulated by RVE1. Overexpression leads to suppression of bri1 phenotype.
Computational
Description (TAIR10)
YUCCA 8 (YUC8); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: brassinosteroid mediated signaling pathway, auxin biosynthetic process; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT5G43890.1); Has 11557 Blast hits to 11539 proteins in 1628 species: Archae - 52; Bacteria - 6582; Metazoa - 787; Fungi - 1560; Plants - 663; Viruses - 0; Other Eukaryotes - 1913 (source: NCBI BLink).
Protein Annotations
BioGrid:14280EC:1.14.13.168eggNOG:COG2072eggNOG:KOG1399
EMBL:AL035353EMBL:AL161573EMBL:BT029238EMBL:CP002687
EnsemblPlants:AT4G28720EnsemblPlants:AT4G28720.1entrez:828993Gene3D:3.50.50.60
GeneID:828993Genevisible:Q9SVU0GO:GO:0004497GO:GO:0004499
GO:GO:0009742GO:GO:0009851GO:GO:0050660GO:GO:0050661
GO:GO:0055114Gramene:AT4G28720.1hmmpanther:PTHR23023hmmpanther:PTHR23023:SF83
HOGENOM:HOG000240759InParanoid:Q9SVU0IntAct:Q9SVU0InterPro:IPR000103
InterPro:IPR020946InterPro:IPR023753KEGG:ath:AT4G28720KO:K11816
OMA:GDMEYIGPaxDb:Q9SVU0Pfam:PF00743Pfam:Q9SVU0
PhylomeDB:Q9SVU0PIR:T04527PRIDE:Q9SVU0PRINTS:PR00469
PRO:PR:Q9SVU0ProteinModelPortal:Q9SVU0Proteomes:UP000006548RefSeq:NP_194601.1
SMR:Q9SVU0STRING:3702.AT4G28720.1SUPFAM:SSF51905TAIR:AT4G28720
tair10-symbols:YUC8UniGene:At.50376UniPathway:UPA00151UniProt:Q9SVU0
Coordinates (TAIR10) chr4:+:14192688..14193968
Molecular Weight (calculated) 48112.40 Da
IEP (calculated) 8.89
GRAVY (calculated) -0.25
Length 426 amino acids
Sequence (TAIR10)
(BLAST)
001: MENMFRLMDQ DQDLTNNRCI WVNGPVIVGA GPSGLATAAC LHEQNVPFVV LERADCIASL WQKRTYDRLK LHLPKQFCQL PKMPFPEDFP EYPTKRQFID
101: YLESYATRFE INPKFNECVQ TARFDETSGL WRVKTVSKSE STQTEVEYIC RWLVVATGEN AERVMPEIDG LSEFSGEVIH ACDYKSGEKF AGKKVLVVGC
201: GNSGMEVSLD LANHFAKPSM VVRSSLHVMP REVMGKSTFE LAMKMLRWFP LWLVDKILLV LSWMVLGNIE KYGLKRPEMG PMELKSVKGK TPVLDIGAIE
301: KIRLGKINVV PGIKRFNGNK VELVNGEQLD VDSVVLATGY RSNVPYWLQE NEFFAKNGFP KTVADNNGWK GRTGLYAVGF TRKGLSGASM DAVKIAQDIG
401: SVWQLETKQP TKRSRGSLRR CISQQF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)