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AT1G21050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF617
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF617; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF617 (TAIR:AT1G76610.1); Has 257 Blast hits to 256 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 257; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:838699eggNOG:ENOG410IEG6eggNOG:ENOG4111N4MEMBL:BT024463
EMBL:CP002684EnsemblPlants:AT1G21050EnsemblPlants:AT1G21050.1entrez:838699
GeneID:838699Gramene:AT1G21050.1hmmpanther:PTHR31276hmmpanther:PTHR31276:SF3
HOGENOM:HOG000238116InterPro:IPR006460KEGG:ath:AT1G21050OMA:AVFLRMM
Pfam:PF04759PhylomeDB:Q2HIW8Proteomes:UP000006548RefSeq:NP_564130.1
TAIR:AT1G21050TIGRfam:TIGR01570TIGRFAMs:TIGR01570UniGene:At.41674
UniProt:Q2HIW8
Coordinates (TAIR10) chr1:+:7366859..7367596
Molecular Weight (calculated) 27416.40 Da
IEP (calculated) 7.80
GRAVY (calculated) -0.37
Length 245 amino acids
Sequence (TAIR10)
(BLAST)
001: MRTMVDLGKQ RDHNYHHMQI ITTPTSVDCS REFRHRRTLR SLIECMIPYC CTYQQQPYQN DTLSVSSTSS SSSSSDHSSS SQSSSTVSGT FFGHRRGRVS
101: FCLQDAAVGS SPLLLLELAV PTAALAKEMD EEGVLRIALE CDRRRSSNSR SSSIFDVPVW SMFCNGRKMG FAVRRKVTEN DAVFLRMMQS VSVGAGVVPS
201: EEEDQMLYLR ARFERVTGSS DSESFHMMNP GGSYGQELSI FLLRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)