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AT5G52900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JNQ0eggNOG:ENOG41114QYEMBL:AB009055EMBL:AK228555
EMBL:AY085371EMBL:BT005766EMBL:BT006089EMBL:CP002688
EnsemblPlants:AT5G52900EnsemblPlants:AT5G52900.1entrez:835367GeneID:835367
Genevisible:Q84JK8GO:GO:0005886GO:GO:0009738Gramene:AT5G52900.1
hmmpanther:PTHR34576hmmpanther:PTHR34576:SF3HOGENOM:HOG000090985InParanoid:Q84JK8
iPTMnet:Q84JK8KEGG:ath:AT5G52900OMA:DEDHSLVPaxDb:Q84JK8
Pfam:Q84JK8PhylomeDB:Q84JK8PRO:PR:Q84JK8Proteomes:UP000006548
RefSeq:NP_568780.1STRING:3702.AT5G52900.1TAIR:AT5G52900UniGene:At.29588
UniProt:Q84JK8
Coordinates (TAIR10) chr5:-:21452893..21453692
Molecular Weight (calculated) 27071.60 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.67
Length 235 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEGKQEASM PLVPIDSFSY SWLVNFPSLE ATIDDHHQTY EDSSSSSSFI EMDPRLPPSR RFFIKTSHES SFKFDNFVSF SDEDHSLVHA DELFRDGYVM
101: PYRLKPTSAA TEEESEPLDT TTSEKIDTRG LNSKPSPTSS RKLRRVSKWV LLKYLDFLTP LCKRLRRCRS AVTTGSIGMD SRIRVTTSCR SRVYSDEMTS
201: SPRISVADDY YWRRSCDSES SIYEAVLHCK KSFEK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)