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AT1G67900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phototropic-responsive NPH3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT3G26490.1); Has 888 Blast hits to 861 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 877; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IINPeggNOG:ENOG410YBGREMBL:AC012563EMBL:AY120729
EMBL:BT008787EMBL:CP002684EnsemblPlants:AT1G67900EnsemblPlants:AT1G67900.1
EnsemblPlants:AT1G67900.2EnsemblPlants:AT1G67900.3entrez:843118GeneID:843118
GO:GO:0016567Gramene:AT1G67900.1Gramene:AT1G67900.2Gramene:AT1G67900.3
hmmpanther:PTHR32370hmmpanther:PTHR32370:SF9HOGENOM:HOG000239180InParanoid:Q9C9V6
InterPro:IPR011333InterPro:IPR027356iPTMnet:Q9C9V6KEGG:ath:AT1G67900
OMA:WWAEDIAPaxDb:Q9C9V6Pfam:PF03000Pfam:Q9C9V6
Pfscan:PS51649PhylomeDB:Q9C9V6PIR:G96701PRIDE:Q9C9V6
PRO:PR:Q9C9V6PROSITE:PS51649ProteinModelPortal:Q9C9V6Proteomes:UP000006548
RefSeq:NP_001185347.1RefSeq:NP_176957.1RefSeq:NP_974103.1STRING:3702.AT1G67900.1
SUPFAM:SSF54695TAIR:AT1G67900UniGene:At.35590UniGene:At.67363
UniPathway:UPA00143UniProt:Q9C9V6
Coordinates (TAIR10) chr1:+:25467737..25469888
Molecular Weight (calculated) 70318.40 Da
IEP (calculated) 9.09
GRAVY (calculated) -0.29
Length 631 amino acids
Sequence (TAIR10)
(BLAST)
001: MKFMKLGSRP DTFYTSEDLR CVSSEVSSDF TIEVSGSRYL LHKFPLLSKC LRLQRMCSES PESIIQLPEF PGGVEAFELC AKFCYGITIT ISAYNIVAAR
101: CAAEYLQMSE EVEKGNLVYK LEVFFNSCIL NGWRDSIVTL QTTKAFPLWS EDLAITSRCI EAIASKVLSH PSKVSLSHSH SRRVRDDDMS SNRAAASSRG
201: WWAEDIAELG IDLYWRTMIA IKSGGKVPAS LIGDALRVYA SKWLPTLQRN RKVVKKKEDS DSDSDTDTSS KHRLLLESII SLLPAEKGAV SCSFLLKLLK
301: AANILNASTS SKMELARRVA LQLEEATVSD LLIPPMSYKS ELLYDVDIVA TILEQFMVQG QTSPPTSPLR GKKGMMDRRR RSRSAENIDL EFQESRRSSS
401: ASHSSKLKVA KLVDGYLQQI ARDVNLPLSK FVTLAESVPE FSRLDHDDLY RAIDIYLKAH KNLNKSERKR VCRVLDCKKL SMEACMHAAQ NEMLPLRVVV
501: QVLFYEQARA AAATNNGEKN TTELPSNIKA LLAAHNIDPS NPNAAAFSTT TSIAAPEDRW SVSGLKSPKS KLSGTLRSKL AEDEEVDERF MNGDGGRTPS
601: RFKAFCAIPG RPKKMFSKLL SINRNSSDKN C
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)