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AT1G70940.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:20374526 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Auxin efflux carrier family protein
Curator
Summary (TAIR10)
A regulator of auxin efflux and involved in differential growth. PIN3 is expressed in gravity-sensing tissues, with PIN3 protein accumulating predominantly at the lateral cell surface. PIN3 localizes to the plasma membrane and to vesicles. In roots, PIN3 is expressed without pronounced polarity in tiers two and three of the columella cells, at the basal side of vascular cells, and to the lateral side of pericycle cells of the elongation zone. PIN3 overexpression inhibits root cell growth. Protein phosphorylation plays a role in PIN3 trafficking to the plasma membrane.
Computational
Description (TAIR10)
PIN-FORMED 3 (PIN3); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: in 8 processes; LOCATED IN: lateral plasma membrane, plasma membrane, vesicle membrane, cell surface; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G23080.1); Has 1983 Blast hits to 1757 proteins in 550 species: Archae - 37; Bacteria - 1198; Metazoa - 14; Fungi - 0; Plants - 487; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).
Protein Annotations
BioGrid:28652eggNOG:ENOG410IJ59eggNOG:ENOG410Y9XEEMBL:AC008148
EMBL:AF087818EMBL:AK226890EMBL:AY136327EMBL:BT002085
EMBL:CP002684EnsemblPlants:AT1G70940EnsemblPlants:AT1G70940.1entrez:843432
ExpressionAtlas:Q9S7Z8GeneID:843432Genevisible:Q9S7Z8GO:GO:0005783
GO:GO:0005886GO:GO:0009416GO:GO:0009606GO:GO:0009630
GO:GO:0009734GO:GO:0009926GO:GO:0009958GO:GO:0009986
GO:GO:0010252GO:GO:0010315GO:GO:0010329GO:GO:0012506
GO:GO:0016021GO:GO:0016328GO:GO:0048364GO:GO:0048766
GO:GO:0048767GO:GO:0055085Gramene:AT1G70940.1hmmpanther:PTHR31752
hmmpanther:PTHR31752:SF14HOGENOM:HOG000238224InParanoid:Q9S7Z8InterPro:IPR004776
InterPro:IPR014024iPTMnet:Q9S7Z8KEGG:ath:AT1G70940KO:K13947
OMA:ENCAPGGPaxDb:Q9S7Z8Pfam:PF03547Pfam:Q9S7Z8
PhylomeDB:Q9S7Z8PIR:G96733PRIDE:Q9S7Z8PRO:PR:Q9S7Z8
ProteinModelPortal:Q9S7Z8Proteomes:UP000006548RefSeq:NP_177250.1STRING:3702.AT1G70940.1
TAIR:AT1G70940tair10-symbols:ATPIN3tair10-symbols:PIN3TCDB:2.A.69.1.4
TIGRfam:TIGR00946TIGRFAMs:TIGR00946TMHMM:TMhelixUniGene:At.11573
UniProt:Q0WV81UniProt:Q9S7Z8
Coordinates (TAIR10) chr1:+:26743170..26745871
Molecular Weight (calculated) 69470.10 Da
IEP (calculated) 8.42
GRAVY (calculated) 0.14
Length 640 amino acids
Sequence (TAIR10)
(BLAST)
001: MISWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS TNNPYAMNLR FIAADTLQKI IMLSLLVLWA NFTRSGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEFRGAKML IMEQFPETAA SIVSFKVESD VVSLDGHDFL ETDAEIGDDG
201: KLHVTVRKSN ASRRSFCGPN MTPRPSNLTG AEIYSLSTTP RGSNFNHSDF YNMMGFPGGR LSNFGPADMY SVQSSRGPTP RPSNFEENCA MASSPRFGYY
301: PGGGAGSYPA PNPEFSSTTT STANKSVNKN PKDVNTNQQT TLPTGGKSNS HDAKELHMFV WSSNGSPVSD RAGLNVFGGA PDNDQGGRSD QGAKEIRMLV
401: PDQSHNGETK AVAHPASGDF GGEQQFSFAG KEEEAERPKD AENGLNKLAP NSTAALQSKT GLGGAEASQR KNMPPASVMT RLILIMVWRK LIRNPNTYSS
501: LIGLIWALVA FRWHVAMPKI IQQSISILSD AGLGMAMFSL GLFMALQPKL IACGNSVATF AMAVRFLTGP AVMAVAAIAI GLRGDLLRVA IVQAALPQGI
601: VPFVFAKEYN VHPAILSTGV IFGMLIALPI TLVYYILLGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)