suba logo
AT2G38120.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
golgi 0.500
plasma membrane 0.500
ASURE: golgi,plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:24030099 (2013): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transmembrane amino acid transporter family protein
Curator
Summary (TAIR10)
Encodes an auxin influx transporter. AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. AUX1 action in the lateral root cap and/or epidermal cells influences lateral root initiation and positioning.
Computational
Description (TAIR10)
AUXIN RESISTANT 1 (AUX1); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: like AUXIN RESISTANT 1 (TAIR:AT5G01240.1); Has 1256 Blast hits to 1251 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 283; Plants - 825; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
Protein Annotations
BioGrid:3734eggNOG:COG0814eggNOG:KOG1303EMBL:AC003028
EMBL:AY054488EMBL:AY087092EMBL:AY093300EMBL:CP002685
EMBL:X98772EnsemblPlants:AT2G38120EnsemblPlants:AT2G38120.1entrez:818390
GeneID:818390Genevisible:Q96247GO:GO:0001736GO:GO:0003333
GO:GO:0005768GO:GO:0005794GO:GO:0005886GO:GO:0009624
GO:GO:0009734GO:GO:0009926GO:GO:0009958GO:GO:0009986
GO:GO:0010011GO:GO:0010311GO:GO:0010328GO:GO:0015171
GO:GO:0015293GO:GO:0016021GO:GO:0048765GO:GO:0048829
GO:GO:0060919Gramene:AT2G38120.1hmmpanther:PTHR22950hmmpanther:PTHR22950:SF256
HOGENOM:HOG000238482InParanoid:Q96247InterPro:IPR013057KEGG:ath:AT2G38120
KO:K13946OMA:CYQCKPAPaxDb:Q96247Pfam:PF01490
Pfam:Q96247PhylomeDB:Q96247PIR:T01244PRIDE:Q96247
PRO:PR:Q96247ProteinModelPortal:Q96247Proteomes:UP000006548RefSeq:NP_565882.1
STRING:3702.AT2G38120.1TAIR:AT2G38120tair10-symbols:AUX1tair10-symbols:MAP1
tair10-symbols:PIR1tair10-symbols:WAV5TCDB:2.A.18.1.1TMHMM:TMhelix
UniGene:At.24295UniProt:Q96247
Coordinates (TAIR10) chr2:+:15973493..15976792
Molecular Weight (calculated) 54062.70 Da
IEP (calculated) 8.44
GRAVY (calculated) 0.44
Length 485 amino acids
Sequence (TAIR10)
(BLAST)
001: MSEGVEAIVA NDNGTDQVNG NRTGKDNEEH DGSTGSNLSN FLWHGGSVWD AWFSCASNQV AQVLLTLPYS FSQLGMLSGI VLQIFYGLLG SWTAYLISVL
101: YVEYRARKEK EGKSFKNHVI QWFEVLDGLL GSYWKALGLA FNCTFLLFGS VIQLIACASN IYYINDHLDK RTWTYIFGAC CATTVFIPSF HNYRIWSFLG
201: LGMTTYTAWY LAIASIIHGQ AEGVKHSGPT KLVLYFTGAT NILYTFGGHA VTVEIMHAMW KPQKFKYIYL MATLYVFTLT IPSAAAVYWA FGDALLDHSN
301: AFSLMPKNAW RDAAVILMLI HQFITFGFAC TPLYFVWEKV IGMHDTKSIC LRALARLPVV IPIWFLAIIF PFFGPINSAV GALLVSFTVY IIPSLAHMLT
401: YRSASARQNA AEKPPFFMPS WTAMYVLNAF VVVWVLIVGF GFGGWASVTN FVRQVDTFGL FAKCYQCKPA AAAAHAPVSA LHHRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)