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AT1G52190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G16180.1); Has 5212 Blast hits to 5001 proteins in 870 species: Archae - 0; Bacteria - 1843; Metazoa - 575; Fungi - 389; Plants - 2143; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink).
Protein Annotations
BioGrid:26874eggNOG:COG3104eggNOG:KOG1237EMBL:AC022354
EMBL:AY058204EMBL:AY084631EMBL:AY098981EMBL:CP002684
EnsemblPlants:AT1G52190EnsemblPlants:AT1G52190.1entrez:841649GeneID:841649
Genevisible:Q9M817GO:GO:0005886GO:GO:0016021GO:GO:0080054
GO:GO:0080055Gramene:AT1G52190.1hmmpanther:PTHR11654hmmpanther:PTHR11654:SF157
HOGENOM:HOG000237399InParanoid:Q9M817InterPro:IPR000109InterPro:IPR020846
iPTMnet:Q9M817KEGG:ath:AT1G52190OMA:GGKESWVPANTHER:PTHR11654
PaxDb:Q9M817Pfam:PF00854Pfam:Q9M817PhylomeDB:Q9M817
PIR:H96561PRIDE:Q9M817PRO:PR:Q9M817ProteinModelPortal:Q9M817
Proteomes:UP000006548Reactome:R-ATH-427975RefSeq:NP_175630.1SMR:Q9M817
STRING:3702.AT1G52190.1SUPFAM:SSF103473TAIR:AT1G52190TCDB:2.A.17.3.13
TMHMM:TMhelixUniGene:At.25542UniProt:Q9M817
Coordinates (TAIR10) chr1:+:19434671..19438673
Molecular Weight (calculated) 66907.60 Da
IEP (calculated) 9.10
GRAVY (calculated) 0.24
Length 607 amino acids
Sequence (TAIR10)
(BLAST)
001: MENPPNETEA KQIQTNEGKK TKGGIITMPF IIANEAFEKV ASYGLLPNMI MYLIRDYRFG VAKGTNVLFM WSAASNFTPL LGAFLSDSYL GRFLTISIAS
101: LSSFLGMVLL WLTAMLPQVK PSPCDPTAAG SHCGSSTASQ LALLYSAFAL ISIGSGGIRP CSLAFGADQL DNKENPKNER VLESFFGWYY ASSAVAVLIA
201: FTGIVYIQEH LGWKIGFGVP AVLMLIAALL FILASPLYVT RGVTKSLFTG LAQAIVAAYK KRKLSLPDHH DSFDCYYHMK DSEIKAPSQK LRFLNKACLI
301: SNREEEIGSD GFALNPWRLC TTDKVEELKA LIKVIPIWST GIMMSINTSQ SSFQLLQATS MDRRLSRHGS SFQVPAGSFG MFTIIALALW VILYDRAVIP
401: LASKIRGRPF RLSVKLRMGL GLFMSFLAMA ISAMVESFRR KKAISQGYAN NSNAVVDISA MWLVPQYVLH GLAEALTAIG QTEFFYTEFP KSMSSIAASL
501: FGLGMAVASL LASVVLNAVN ELTSRNGKES WVSDNINKGH YNYYYWVLAI MSFINVIYYV ICSWSYGPLV DQVRNGRVNG VREEEELIDI VGKGFEKEDL
601: SPVVKTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)