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AT1G78970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : lupeol synthase 1
Curator
Summary (TAIR10)
Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17β-dammarenyl cation.
Computational
Description (TAIR10)
lupeol synthase 1 (LUP1); CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: lupeol synthase 2 (TAIR:AT1G78960.1); Has 2106 Blast hits to 1984 proteins in 578 species: Archae - 2; Bacteria - 957; Metazoa - 82; Fungi - 241; Plants - 614; Viruses - 0; Other Eukaryotes - 210 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1793-MONOMERBioGrid:29456BRENDA:4.2.1.128BRENDA:5.4.99.41
EC:4.2.1.128EC:5.4.99.41eggNOG:COG1657eggNOG:KOG0497
EMBL:AC002986EMBL:AF360147EMBL:AY052358EMBL:AY142678
EMBL:CP002684EMBL:U49919EMBL:U87266EnsemblPlants:AT1G78970
EnsemblPlants:AT1G78970.1EnsemblPlants:AT1G78970.2entrez:844237Gene3D:1.50.10.20
GeneID:844237Genevisible:Q9C5M3GO:GO:0016829GO:GO:0042299
GO:GO:0042300Gramene:AT1G78970.1Gramene:AT1G78970.2gramene_pathway:5.4.99.-
gramene_pathway:PWY-112hmmpanther:PTHR11764hmmpanther:PTHR11764:SF18HOGENOM:HOG000234317
InParanoid:Q9C5M3InterPro:IPR002365InterPro:IPR008930InterPro:IPR018333
InterPro:IPR032696InterPro:IPR032697KEGG:ath:AT1G78970KO:K15816
OMA:EFMANTMPaxDb:Q9C5M3Pfam:PF13243Pfam:PF13249
Pfam:Q9C5M3PhylomeDB:Q9C5M3PIR:T01058PRIDE:Q9C5M3
PRO:PR:Q9C5M3PROSITE:PS01074ProteinModelPortal:Q9C5M3Proteomes:UP000006548
RefSeq:NP_178018.1RefSeq:NP_849903.1scanprosite:PS01074SMR:Q9C5M3
STRING:3702.AT1G78970.1SUPFAM:SSF48239TAIR:AT1G78970tair10-symbols:ATLUP1
tair10-symbols:LUP1TIGRfam:TIGR01787TIGRFAMs:TIGR01787UniGene:At.19007
UniProt:Q9C5M3
Coordinates (TAIR10) chr1:+:29703414..29707715
Molecular Weight (calculated) 87356.80 Da
IEP (calculated) 6.44
GRAVY (calculated) -0.31
Length 757 amino acids
Sequence (TAIR10)
(BLAST)
001: MWKLKIGKGN GEDPHLFSSN NFVGRQTWKF DHKAGSPEER AAVEEARRGF LDNRFRVKGC SDLLWRMQFL REKKFEQGIP QLKATNIEEI TYETTTNALR
101: RGVRYFTALQ ASDGHWPGEI TGPLFFLPPL IFCLYITGHL EEVFDAEHRK EMLRHIYCHQ NEDGGWGLHI ESKSVMFCTV LNYICLRMLG ENPEQDACKR
201: ARQWILDRGG VIFIPSWGKF WLSILGVYDW SGTNPTPPEL LMLPSFLPIH PGKILCYSRM VSIPMSYLYG KRFVGPITPL ILLLREELYL EPYEEINWKK
301: SRRLYAKEDM YYAHPLVQDL LSDTLQNFVE PLLTRWPLNK LVREKALQLT MKHIHYEDEN SHYITIGCVE KVLCMLACWV ENPNGDYFKK HLARIPDYMW
401: VAEDGMKMQS FGCQLWDTGF AIQALLASNL PDETDDALKR GHNYIKASQV RENPSGDFRS MYRHISKGAW TFSDRDHGWQ VSDCTAEALK CCLLLSMMSA
501: DIVGQKIDDE QLYDSVNLLL SLQSGNGGVN AWEPSRAYKW LELLNPTEFM ANTMVEREFV ECTSSVIQAL DLFRKLYPDH RKKEINRSIE KAVQFIQDNQ
601: TPDGSWYGNW GVCFIYATWF ALGGLAAAGE TYNDCLAMRN GVHFLLTTQR DDGGWGESYL SCSEQRYIPS EGERSNLVQT SWAMMALIHT GQAERDLIPL
701: HRAAKLIINS QLENGDFPQQ EIVGAFMNTC MLHYATYRNT FPLWALAEYR KVVFIVN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)