AT5G06930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.980 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 3369 Blast hits to 1526 proteins in 313 species: Archae - 2; Bacteria - 910; Metazoa - 754; Fungi - 336; Plants - 137; Viruses - 11; Other Eukaryotes - 1219 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:2145139..2147849 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 80576.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.96 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||
| Length | 723 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKRFERPRTS IHSQPRTSTS SGKKDQKPRS SSSKGSGVKP LNAAQLVSRV LDATTASEPS SVAVTDSTTG SESSEVYENV NVHYMDDANE KSRTDGNLVG 101: CEEEEGNGDE SDTETNNGSV SWSQCELFSP EEKKSERPSM VSKSKSSQDR PLTSKGRTNI ADSVRSRSNT FHSTARKTVR SSKSQAKALS DFSSYRSSEN 201: NKAFSSASPV DSTPFEEGKE DDEFEDALNS VHNNESDNET LVYKEKKRSD VEKVLAQKIE TMEARIEKLE EELREVAALE MSLYSVFPEH GSSSHKLHKP 301: ARNLSRLYAL ARKNQSENKI ISVTKNIVSG LSLLLKSCGS DVSRLTYWLS NTVMLREIIS LDFGSSKLNG LNSLKEDWGD VRTLIAALRR VESCFFTQAV 401: ESIWSQVMMV HMIPQGVDST MGEMIGNFSE PATCDRLQES FSVNLWKEAF EEALQRLCPV QATRRQCGCL HVLTRMVMEQ CIVRLDVAMF NAILRESAHH 501: IPTDSASDPI ADSRVLPIPA GVLSFESGVK LKNTVSYWSR LLTDIFGIDV EQKMQRGDET FKPFHLLNEL SDLLMLPKEM FVDSSTRDEV CPSIGLSLIK 601: RIVCNFTPDE FCPYPVPGTV LEELNAQSIL ENRSLSRDTA RGFPRQVNPV SYSPPSCSHL TDIVAEFSVK LKLSMTHKNG YSSNEKVETP RSPPYYNVIK 701: GAVAKDNLNL SETNERYRLL GEA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)